Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
61 |
5.0% |
| Arg[R] |
60 |
4.9% |
| Asn[N] |
86 |
7.0% |
| Asp[D] |
70 |
5.7% |
| Cys[C] |
6 |
0.5% |
| Gln[Q] |
62 |
5.1% |
| Glu[E] |
135 |
11.0% |
| Gly[G] |
49 |
4.0% |
| His[H] |
18 |
1.5% |
| Ile[I] |
94 |
7.7% |
| Leu[L] |
131 |
10.7% |
| Lys[K] |
134 |
10.9% |
| Met[M] |
17 |
1.4% |
| Phe[F] |
39 |
3.2% |
| Pro[P] |
22 |
1.8% |
| Ser[S] |
94 |
7.7% |
| Thr[T] |
53 |
4.3% |
| Trp[W] |
3 |
0.2% |
| Tyr[Y] |
40 |
3.3% |
| Val[V] |
51 |
4.2% |
| Total Length |
1225 |
|
| Instability index (II) |
44.00 |
| This classifies the protein as unstable |
|
| Carbon |
6218 |
| Hydrogen |
10068 |
| Nitrogen |
1726 |
| Oxygen |
1971 |
| Sulfur |
23 |
| Total number of atoms |
20006 |
| Formula = C6218H10068N1726O1971S23 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
76475 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
76100 M-1 cm-1 |
| assuming all Cys residues are reduced |
76100 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
76475 M-1 cm-1 |
|
|
| Codon Bias |
0.097 |
| Codon Adaptation Index |
0.163 |
| Frequency of Optimal Codons |
0.476 |
| Hydropathicity of Protein |
-0.740 |
| Aromaticity Score |
0.067 |
|
