Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
18 |
3.3% |
| Arg[R] |
14 |
2.6% |
| Asn[N] |
20 |
3.7% |
| Asp[D] |
14 |
2.6% |
| Cys[C] |
12 |
2.2% |
| Gln[Q] |
13 |
2.4% |
| Glu[E] |
24 |
4.4% |
| Gly[G] |
47 |
8.7% |
| His[H] |
7 |
1.3% |
| Ile[I] |
66 |
12.2% |
| Leu[L] |
66 |
12.2% |
| Lys[K] |
32 |
5.9% |
| Met[M] |
21 |
3.9% |
| Phe[F] |
36 |
6.7% |
| Pro[P] |
24 |
4.4% |
| Ser[S] |
40 |
7.4% |
| Thr[T] |
33 |
6.1% |
| Trp[W] |
13 |
2.4% |
| Tyr[Y] |
15 |
2.8% |
| Val[V] |
25 |
4.6% |
| Total Length |
540 |
|
| Instability index (II) |
36.42 |
| This classifies the protein as stable |
|
| Carbon |
2819 |
| Hydrogen |
4410 |
| Nitrogen |
674 |
| Oxygen |
738 |
| Sulfur |
33 |
| Total number of atoms |
8674 |
| Formula = C2819H4410N674O738S33 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
94600 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
93850 M-1 cm-1 |
| assuming all Cys residues are reduced |
93850 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
94600 M-1 cm-1 |
|
|
| Codon Bias |
-0.015 |
| Codon Adaptation Index |
0.103 |
| Frequency of Optimal Codons |
0.403 |
| Hydropathicity of Protein |
0.470 |
| Aromaticity Score |
0.119 |
|
