Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
28 |
5.0% |
| Arg[R] |
18 |
3.2% |
| Asn[N] |
35 |
6.2% |
| Asp[D] |
64 |
11.4% |
| Cys[C] |
3 |
0.5% |
| Gln[Q] |
28 |
5.0% |
| Glu[E] |
39 |
6.9% |
| Gly[G] |
23 |
4.1% |
| His[H] |
8 |
1.4% |
| Ile[I] |
37 |
6.6% |
| Leu[L] |
35 |
6.2% |
| Lys[K] |
45 |
8.0% |
| Met[M] |
16 |
2.8% |
| Phe[F] |
8 |
1.4% |
| Pro[P] |
37 |
6.6% |
| Ser[S] |
49 |
8.7% |
| Thr[T] |
45 |
8.0% |
| Trp[W] |
7 |
1.2% |
| Tyr[Y] |
6 |
1.1% |
| Val[V] |
31 |
5.5% |
| Total Length |
562 |
|
| Instability index (II) |
48.80 |
| This classifies the protein as unstable |
|
| Carbon |
2678 |
| Hydrogen |
4295 |
| Nitrogen |
747 |
| Oxygen |
932 |
| Sulfur |
19 |
| Total number of atoms |
8671 |
| Formula = C2678H4295N747O932S19 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
47565 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
47440 M-1 cm-1 |
| assuming all Cys residues are reduced |
47440 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
47565 M-1 cm-1 |
|
|
| Codon Bias |
0.100 |
| Codon Adaptation Index |
0.155 |
| Frequency of Optimal Codons |
0.481 |
| Hydropathicity of Protein |
-0.847 |
| Aromaticity Score |
0.037 |
|
