Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
39 |
11.9% |
| Arg[R] |
2 |
0.6% |
| Asn[N] |
11 |
3.3% |
| Asp[D] |
12 |
3.6% |
| Cys[C] |
4 |
1.2% |
| Gln[Q] |
15 |
4.6% |
| Glu[E] |
14 |
4.3% |
| Gly[G] |
21 |
6.4% |
| His[H] |
6 |
1.8% |
| Ile[I] |
10 |
3.0% |
| Leu[L] |
13 |
4.0% |
| Lys[K] |
8 |
2.4% |
| Met[M] |
3 |
0.9% |
| Phe[F] |
8 |
2.4% |
| Pro[P] |
12 |
3.6% |
| Ser[S] |
47 |
14.3% |
| Thr[T] |
62 |
18.8% |
| Trp[W] |
4 |
1.2% |
| Tyr[Y] |
10 |
3.0% |
| Val[V] |
28 |
8.5% |
| Total Length |
329 |
|
| Instability index (II) |
30.18 |
| This classifies the protein as stable |
|
| Carbon |
1452 |
| Hydrogen |
2273 |
| Nitrogen |
385 |
| Oxygen |
527 |
| Sulfur |
7 |
| Total number of atoms |
4644 |
| Formula = C1452H2273N385O527S7 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
37150 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
36900 M-1 cm-1 |
| assuming all Cys residues are reduced |
36900 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
37150 M-1 cm-1 |
|
|
| Codon Bias |
0.316 |
| Codon Adaptation Index |
0.231 |
| Frequency of Optimal Codons |
0.596 |
| Hydropathicity of Protein |
-0.141 |
| Aromaticity Score |
0.067 |
|
