Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
26 |
7.4% |
| Arg[R] |
9 |
2.5% |
| Asn[N] |
14 |
4.0% |
| Asp[D] |
12 |
3.4% |
| Cys[C] |
6 |
1.7% |
| Gln[Q] |
10 |
2.8% |
| Glu[E] |
13 |
3.7% |
| Gly[G] |
20 |
5.7% |
| His[H] |
11 |
3.1% |
| Ile[I] |
27 |
7.6% |
| Leu[L] |
32 |
9.1% |
| Lys[K] |
15 |
4.2% |
| Met[M] |
9 |
2.5% |
| Phe[F] |
28 |
7.9% |
| Pro[P] |
15 |
4.2% |
| Ser[S] |
37 |
10.5% |
| Thr[T] |
12 |
3.4% |
| Trp[W] |
13 |
3.7% |
| Tyr[Y] |
22 |
6.2% |
| Val[V] |
22 |
6.2% |
| Total Length |
353 |
|
| Instability index (II) |
41.69 |
| This classifies the protein as unstable |
|
| Carbon |
1901 |
| Hydrogen |
2784 |
| Nitrogen |
454 |
| Oxygen |
499 |
| Sulfur |
15 |
| Total number of atoms |
5653 |
| Formula = C1901H2784N454O499S15 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
104655 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
104280 M-1 cm-1 |
| assuming all Cys residues are reduced |
104280 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
104655 M-1 cm-1 |
|
|
| Codon Bias |
0.072 |
| Codon Adaptation Index |
0.147 |
| Frequency of Optimal Codons |
0.450 |
| Hydropathicity of Protein |
0.218 |
| Aromaticity Score |
0.178 |
|
