Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
53 |
4.5% |
| Arg[R] |
46 |
3.9% |
| Asn[N] |
98 |
8.4% |
| Asp[D] |
56 |
4.8% |
| Cys[C] |
13 |
1.1% |
| Gln[Q] |
70 |
6.0% |
| Glu[E] |
49 |
4.2% |
| Gly[G] |
71 |
6.1% |
| His[H] |
20 |
1.7% |
| Ile[I] |
64 |
5.5% |
| Leu[L] |
104 |
8.9% |
| Lys[K] |
62 |
5.3% |
| Met[M] |
21 |
1.8% |
| Phe[F] |
42 |
3.6% |
| Pro[P] |
71 |
6.1% |
| Ser[S] |
154 |
13.2% |
| Thr[T] |
83 |
7.1% |
| Trp[W] |
7 |
0.6% |
| Tyr[Y] |
28 |
2.4% |
| Val[V] |
58 |
5.0% |
| Total Length |
1170 |
|
| Instability index (II) |
48.77 |
| This classifies the protein as unstable |
|
| Carbon |
5578 |
| Hydrogen |
8859 |
| Nitrogen |
1585 |
| Oxygen |
1814 |
| Sulfur |
34 |
| Total number of atoms |
17870 |
| Formula = C5578H8859N1585O1814S34 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
80970 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
80220 M-1 cm-1 |
| assuming all Cys residues are reduced |
80220 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
80970 M-1 cm-1 |
|
|
| Codon Bias |
0.042 |
| Codon Adaptation Index |
0.113 |
| Frequency of Optimal Codons |
0.426 |
| Hydropathicity of Protein |
-0.532 |
| Aromaticity Score |
0.066 |
|
