Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
66 |
4.5% |
| Arg[R] |
71 |
4.8% |
| Asn[N] |
73 |
4.9% |
| Asp[D] |
112 |
7.6% |
| Cys[C] |
23 |
1.6% |
| Gln[Q] |
38 |
2.6% |
| Glu[E] |
128 |
8.6% |
| Gly[G] |
78 |
5.3% |
| His[H] |
34 |
2.3% |
| Ile[I] |
110 |
7.4% |
| Leu[L] |
167 |
11.3% |
| Lys[K] |
79 |
5.3% |
| Met[M] |
33 |
2.2% |
| Phe[F] |
77 |
5.2% |
| Pro[P] |
44 |
3.0% |
| Ser[S] |
139 |
9.4% |
| Thr[T] |
78 |
5.3% |
| Trp[W] |
7 |
0.5% |
| Tyr[Y] |
43 |
2.9% |
| Val[V] |
83 |
5.6% |
| Total Length |
1483 |
|
| Instability index (II) |
41.16 |
| This classifies the protein as unstable |
|
| Carbon |
7445 |
| Hydrogen |
11707 |
| Nitrogen |
1961 |
| Oxygen |
2335 |
| Sulfur |
56 |
| Total number of atoms |
23504 |
| Formula = C7445H11707N1961O2335S56 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
103945 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
102570 M-1 cm-1 |
| assuming all Cys residues are reduced |
102570 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
103945 M-1 cm-1 |
|
|
| Codon Bias |
0.055 |
| Codon Adaptation Index |
0.139 |
| Frequency of Optimal Codons |
0.441 |
| Hydropathicity of Protein |
-0.244 |
| Aromaticity Score |
0.086 |
|
