Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
17 |
4.3% |
| Arg[R] |
21 |
5.3% |
| Asn[N] |
15 |
3.8% |
| Asp[D] |
20 |
5.1% |
| Cys[C] |
4 |
1.0% |
| Gln[Q] |
17 |
4.3% |
| Glu[E] |
22 |
5.6% |
| Gly[G] |
24 |
6.1% |
| His[H] |
19 |
4.8% |
| Ile[I] |
17 |
4.3% |
| Leu[L] |
42 |
10.7% |
| Lys[K] |
15 |
3.8% |
| Met[M] |
12 |
3.1% |
| Phe[F] |
20 |
5.1% |
| Pro[P] |
28 |
7.1% |
| Ser[S] |
30 |
7.6% |
| Thr[T] |
24 |
6.1% |
| Trp[W] |
8 |
2.0% |
| Tyr[Y] |
16 |
4.1% |
| Val[V] |
22 |
5.6% |
| Total Length |
393 |
|
| Instability index (II) |
50.14 |
| This classifies the protein as unstable |
|
| Carbon |
2038 |
| Hydrogen |
3097 |
| Nitrogen |
549 |
| Oxygen |
580 |
| Sulfur |
16 |
| Total number of atoms |
6280 |
| Formula = C2038H3097N549O580S16 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
68090 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
67840 M-1 cm-1 |
| assuming all Cys residues are reduced |
67840 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
68090 M-1 cm-1 |
|
|
| Codon Bias |
0.053 |
| Codon Adaptation Index |
0.091 |
| Frequency of Optimal Codons |
0.424 |
| Hydropathicity of Protein |
-0.377 |
| Aromaticity Score |
0.112 |
|
