Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
72 |
9.8% |
| Arg[R] |
17 |
2.3% |
| Asn[N] |
23 |
3.1% |
| Asp[D] |
28 |
3.8% |
| Cys[C] |
11 |
1.5% |
| Gln[Q] |
20 |
2.7% |
| Glu[E] |
32 |
4.4% |
| Gly[G] |
55 |
7.5% |
| His[H] |
9 |
1.2% |
| Ile[I] |
57 |
7.8% |
| Leu[L] |
76 |
10.3% |
| Lys[K] |
32 |
4.4% |
| Met[M] |
26 |
3.5% |
| Phe[F] |
39 |
5.3% |
| Pro[P] |
27 |
3.7% |
| Ser[S] |
53 |
7.2% |
| Thr[T] |
49 |
6.7% |
| Trp[W] |
12 |
1.6% |
| Tyr[Y] |
38 |
5.2% |
| Val[V] |
59 |
8.0% |
| Total Length |
735 |
|
| Instability index (II) |
31.94 |
| This classifies the protein as stable |
|
| Carbon |
3709 |
| Hydrogen |
5733 |
| Nitrogen |
891 |
| Oxygen |
1039 |
| Sulfur |
37 |
| Total number of atoms |
11409 |
| Formula = C3709H5733N891O1039S37 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
123245 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
122620 M-1 cm-1 |
| assuming all Cys residues are reduced |
122620 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
123245 M-1 cm-1 |
|
|
| Codon Bias |
0.123 |
| Codon Adaptation Index |
0.155 |
| Frequency of Optimal Codons |
0.475 |
| Hydropathicity of Protein |
0.430 |
| Aromaticity Score |
0.121 |
|
