Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
14 |
5.6% |
| Arg[R] |
11 |
4.4% |
| Asn[N] |
15 |
6.0% |
| Asp[D] |
15 |
6.0% |
| Cys[C] |
1 |
0.4% |
| Gln[Q] |
7 |
2.8% |
| Glu[E] |
19 |
7.6% |
| Gly[G] |
13 |
5.2% |
| His[H] |
5 |
2.0% |
| Ile[I] |
16 |
6.4% |
| Leu[L] |
20 |
8.0% |
| Lys[K] |
19 |
7.6% |
| Met[M] |
7 |
2.8% |
| Phe[F] |
10 |
4.0% |
| Pro[P] |
18 |
7.2% |
| Ser[S] |
17 |
6.8% |
| Thr[T] |
21 |
8.4% |
| Trp[W] |
3 |
1.2% |
| Tyr[Y] |
10 |
4.0% |
| Val[V] |
9 |
3.6% |
| Total Length |
250 |
|
| Instability index (II) |
39.14 |
| This classifies the protein as stable |
|
| Carbon |
1265 |
| Hydrogen |
1973 |
| Nitrogen |
337 |
| Oxygen |
389 |
| Sulfur |
8 |
| Total number of atoms |
3972 |
| Formula = C1265H1973N337O389S8 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
31400 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
31400 M-1 cm-1 |
| assuming all Cys residues are reduced |
31400 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
31400 M-1 cm-1 |
|
|
| Codon Bias |
0.104 |
| Codon Adaptation Index |
0.148 |
| Frequency of Optimal Codons |
0.471 |
| Hydropathicity of Protein |
-0.635 |
| Aromaticity Score |
0.092 |
|
