Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
124 |
5.9% |
| Arg[R] |
84 |
4.0% |
| Asn[N] |
125 |
5.9% |
| Asp[D] |
111 |
5.3% |
| Cys[C] |
13 |
0.6% |
| Gln[Q] |
130 |
6.2% |
| Glu[E] |
127 |
6.0% |
| Gly[G] |
58 |
2.8% |
| His[H] |
34 |
1.6% |
| Ile[I] |
163 |
7.7% |
| Leu[L] |
275 |
13.0% |
| Lys[K] |
134 |
6.4% |
| Met[M] |
44 |
2.1% |
| Phe[F] |
115 |
5.5% |
| Pro[P] |
87 |
4.1% |
| Ser[S] |
159 |
7.5% |
| Thr[T] |
124 |
5.9% |
| Trp[W] |
19 |
0.9% |
| Tyr[Y] |
48 |
2.3% |
| Val[V] |
134 |
6.4% |
| Total Length |
2108 |
|
| Instability index (II) |
42.75 |
| This classifies the protein as unstable |
|
| Carbon |
10870 |
| Hydrogen |
17298 |
| Nitrogen |
2836 |
| Oxygen |
3171 |
| Sulfur |
57 |
| Total number of atoms |
34232 |
| Formula = C10870H17298N2836O3171S57 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
176770 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
176020 M-1 cm-1 |
| assuming all Cys residues are reduced |
176020 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
176770 M-1 cm-1 |
|
|
| Codon Bias |
0.131 |
| Codon Adaptation Index |
0.169 |
| Frequency of Optimal Codons |
0.487 |
| Hydropathicity of Protein |
-0.089 |
| Aromaticity Score |
0.086 |
|
