Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
35 |
6.8% |
| Arg[R] |
25 |
4.9% |
| Asn[N] |
25 |
4.9% |
| Asp[D] |
23 |
4.5% |
| Cys[C] |
9 |
1.8% |
| Gln[Q] |
15 |
2.9% |
| Glu[E] |
23 |
4.5% |
| Gly[G] |
31 |
6.1% |
| His[H] |
10 |
2.0% |
| Ile[I] |
37 |
7.2% |
| Leu[L] |
47 |
9.2% |
| Lys[K] |
20 |
3.9% |
| Met[M] |
20 |
3.9% |
| Phe[F] |
37 |
7.2% |
| Pro[P] |
17 |
3.3% |
| Ser[S] |
45 |
8.8% |
| Thr[T] |
21 |
4.1% |
| Trp[W] |
16 |
3.1% |
| Tyr[Y] |
16 |
3.1% |
| Val[V] |
40 |
7.8% |
| Total Length |
512 |
|
| Instability index (II) |
37.62 |
| This classifies the protein as stable |
|
| Carbon |
2667 |
| Hydrogen |
4063 |
| Nitrogen |
683 |
| Oxygen |
727 |
| Sulfur |
29 |
| Total number of atoms |
8169 |
| Formula = C2667H4063N683O727S29 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
112340 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
111840 M-1 cm-1 |
| assuming all Cys residues are reduced |
111840 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
112340 M-1 cm-1 |
|
|
| Codon Bias |
0.074 |
| Codon Adaptation Index |
0.130 |
| Frequency of Optimal Codons |
0.447 |
| Hydropathicity of Protein |
0.178 |
| Aromaticity Score |
0.135 |
|
