Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
22 |
5.0% |
| Arg[R] |
25 |
5.7% |
| Asn[N] |
24 |
5.5% |
| Asp[D] |
28 |
6.4% |
| Cys[C] |
4 |
0.9% |
| Gln[Q] |
44 |
10.0% |
| Glu[E] |
44 |
10.0% |
| Gly[G] |
16 |
3.6% |
| His[H] |
15 |
3.4% |
| Ile[I] |
19 |
4.3% |
| Leu[L] |
39 |
8.9% |
| Lys[K] |
33 |
7.5% |
| Met[M] |
12 |
2.7% |
| Phe[F] |
16 |
3.6% |
| Pro[P] |
19 |
4.3% |
| Ser[S] |
31 |
7.0% |
| Thr[T] |
23 |
5.2% |
| Trp[W] |
3 |
0.7% |
| Tyr[Y] |
8 |
1.8% |
| Val[V] |
15 |
3.4% |
| Total Length |
440 |
|
| Instability index (II) |
55.14 |
| This classifies the protein as unstable |
|
| Carbon |
2208 |
| Hydrogen |
3501 |
| Nitrogen |
649 |
| Oxygen |
715 |
| Sulfur |
16 |
| Total number of atoms |
7089 |
| Formula = C2208H3501N649O715S16 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
28670 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
28420 M-1 cm-1 |
| assuming all Cys residues are reduced |
28420 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
28670 M-1 cm-1 |
|
|
| Codon Bias |
0.088 |
| Codon Adaptation Index |
0.133 |
| Frequency of Optimal Codons |
0.464 |
| Hydropathicity of Protein |
-1.037 |
| Aromaticity Score |
0.061 |
|
