Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
64 |
3.3% |
| Arg[R] |
79 |
4.1% |
| Asn[N] |
151 |
7.9% |
| Asp[D] |
107 |
5.6% |
| Cys[C] |
19 |
1.0% |
| Gln[Q] |
77 |
4.0% |
| Glu[E] |
145 |
7.6% |
| Gly[G] |
68 |
3.5% |
| His[H] |
42 |
2.2% |
| Ile[I] |
154 |
8.0% |
| Leu[L] |
208 |
10.9% |
| Lys[K] |
152 |
7.9% |
| Met[M] |
41 |
2.1% |
| Phe[F] |
69 |
3.6% |
| Pro[P] |
89 |
4.6% |
| Ser[S] |
186 |
9.7% |
| Thr[T] |
96 |
5.0% |
| Trp[W] |
13 |
0.7% |
| Tyr[Y] |
45 |
2.3% |
| Val[V] |
111 |
5.8% |
| Total Length |
1916 |
|
| Instability index (II) |
47.50 |
| This classifies the protein as unstable |
|
| Carbon |
9653 |
| Hydrogen |
15490 |
| Nitrogen |
2630 |
| Oxygen |
2976 |
| Sulfur |
60 |
| Total number of atoms |
30809 |
| Formula = C9653H15490N2630O2976S60 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
139675 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
138550 M-1 cm-1 |
| assuming all Cys residues are reduced |
138550 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
139675 M-1 cm-1 |
|
|
| Codon Bias |
0.000 |
| Codon Adaptation Index |
0.000 |
| Frequency of Optimal Codons |
0.000 |
| Hydropathicity of Protein |
0.000 |
| Aromaticity Score |
0.000 |
|
