Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
54 |
6.4% |
| Arg[R] |
46 |
5.4% |
| Asn[N] |
45 |
5.3% |
| Asp[D] |
65 |
7.7% |
| Cys[C] |
12 |
1.4% |
| Gln[Q] |
41 |
4.9% |
| Glu[E] |
55 |
6.5% |
| Gly[G] |
38 |
4.5% |
| His[H] |
10 |
1.2% |
| Ile[I] |
52 |
6.2% |
| Leu[L] |
90 |
10.7% |
| Lys[K] |
51 |
6.0% |
| Met[M] |
25 |
3.0% |
| Phe[F] |
29 |
3.4% |
| Pro[P] |
35 |
4.1% |
| Ser[S] |
60 |
7.1% |
| Thr[T] |
55 |
6.5% |
| Trp[W] |
1 |
0.1% |
| Tyr[Y] |
25 |
3.0% |
| Val[V] |
56 |
6.6% |
| Total Length |
845 |
|
| Instability index (II) |
43.16 |
| This classifies the protein as unstable |
|
| Carbon |
4165 |
| Hydrogen |
6705 |
| Nitrogen |
1141 |
| Oxygen |
1312 |
| Sulfur |
37 |
| Total number of atoms |
13360 |
| Formula = C4165H6705N1141O1312S37 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
42010 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
41260 M-1 cm-1 |
| assuming all Cys residues are reduced |
42750 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
43500 M-1 cm-1 |
|
|
| Codon Bias |
0.000 |
| Codon Adaptation Index |
0.000 |
| Frequency of Optimal Codons |
0.000 |
| Hydropathicity of Protein |
0.000 |
| Aromaticity Score |
0.000 |
|
