Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
49 |
3.4% |
| Arg[R] |
62 |
4.3% |
| Asn[N] |
106 |
7.3% |
| Asp[D] |
77 |
5.3% |
| Cys[C] |
29 |
2.0% |
| Gln[Q] |
51 |
3.5% |
| Glu[E] |
85 |
5.8% |
| Gly[G] |
49 |
3.4% |
| His[H] |
26 |
1.8% |
| Ile[I] |
137 |
9.4% |
| Leu[L] |
157 |
10.8% |
| Lys[K] |
91 |
6.3% |
| Met[M] |
24 |
1.7% |
| Phe[F] |
80 |
5.5% |
| Pro[P] |
53 |
3.6% |
| Ser[S] |
140 |
9.6% |
| Thr[T] |
84 |
5.8% |
| Trp[W] |
11 |
0.8% |
| Tyr[Y] |
54 |
3.7% |
| Val[V] |
89 |
6.1% |
| Total Length |
1454 |
|
| Instability index (II) |
40.57 |
| This classifies the protein as unstable |
|
| Carbon |
7495 |
| Hydrogen |
11807 |
| Nitrogen |
1951 |
| Oxygen |
2214 |
| Sulfur |
53 |
| Total number of atoms |
23520 |
| Formula = C7495H11807N1951O2214S53 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
142710 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
140960 M-1 cm-1 |
| assuming all Cys residues are reduced |
140960 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
142710 M-1 cm-1 |
|
|
| Codon Bias |
0.000 |
| Codon Adaptation Index |
0.000 |
| Frequency of Optimal Codons |
0.000 |
| Hydropathicity of Protein |
0.000 |
| Aromaticity Score |
0.000 |
|
