Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
15 |
5.0% |
| Arg[R] |
9 |
3.0% |
| Asn[N] |
20 |
6.7% |
| Asp[D] |
9 |
3.0% |
| Cys[C] |
4 |
1.3% |
| Gln[Q] |
6 |
2.0% |
| Glu[E] |
6 |
2.0% |
| Gly[G] |
8 |
2.7% |
| His[H] |
3 |
1.0% |
| Ile[I] |
28 |
9.4% |
| Leu[L] |
38 |
12.8% |
| Lys[K] |
18 |
6.0% |
| Met[M] |
10 |
3.4% |
| Phe[F] |
18 |
6.0% |
| Pro[P] |
10 |
3.4% |
| Ser[S] |
37 |
12.4% |
| Thr[T] |
17 |
5.7% |
| Trp[W] |
5 |
1.7% |
| Tyr[Y] |
14 |
4.7% |
| Val[V] |
23 |
7.7% |
| Total Length |
298 |
|
| Instability index (II) |
44.34 |
| This classifies the protein as unstable |
|
| Carbon |
1562 |
| Hydrogen |
2456 |
| Nitrogen |
380 |
| Oxygen |
423 |
| Sulfur |
14 |
| Total number of atoms |
4835 |
| Formula = C1562H2456N380O423S14 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
48610 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
48360 M-1 cm-1 |
| assuming all Cys residues are reduced |
48360 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
48610 M-1 cm-1 |
|
|
| Codon Bias |
0.029 |
| Codon Adaptation Index |
0.132 |
| Frequency of Optimal Codons |
0.428 |
| Hydropathicity of Protein |
0.423 |
| Aromaticity Score |
0.124 |
|
