Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
59 |
5.1% |
| Arg[R] |
46 |
3.9% |
| Asn[N] |
59 |
5.1% |
| Asp[D] |
84 |
7.2% |
| Cys[C] |
22 |
1.9% |
| Gln[Q] |
35 |
3.0% |
| Glu[E] |
54 |
4.6% |
| Gly[G] |
62 |
5.3% |
| His[H] |
23 |
2.0% |
| Ile[I] |
73 |
6.3% |
| Leu[L] |
102 |
8.8% |
| Lys[K] |
83 |
7.1% |
| Met[M] |
30 |
2.6% |
| Phe[F] |
56 |
4.8% |
| Pro[P] |
55 |
4.7% |
| Ser[S] |
105 |
9.0% |
| Thr[T] |
73 |
6.3% |
| Trp[W] |
23 |
2.0% |
| Tyr[Y] |
41 |
3.5% |
| Val[V] |
80 |
6.9% |
| Total Length |
1165 |
|
| Instability index (II) |
39.00 |
| This classifies the protein as stable |
|
| Carbon |
5904 |
| Hydrogen |
9173 |
| Nitrogen |
1549 |
| Oxygen |
1755 |
| Sulfur |
52 |
| Total number of atoms |
18433 |
| Formula = C5904H9173N1549O1755S52 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
188965 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
187590 M-1 cm-1 |
| assuming all Cys residues are reduced |
187590 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
188965 M-1 cm-1 |
|
|
| Codon Bias |
0.114 |
| Codon Adaptation Index |
0.167 |
| Frequency of Optimal Codons |
0.478 |
| Hydropathicity of Protein |
-0.267 |
| Aromaticity Score |
0.103 |
|
