Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
64 |
5.6% |
| Arg[R] |
56 |
4.9% |
| Asn[N] |
58 |
5.0% |
| Asp[D] |
72 |
6.3% |
| Cys[C] |
24 |
2.1% |
| Gln[Q] |
72 |
6.3% |
| Glu[E] |
87 |
7.6% |
| Gly[G] |
55 |
4.8% |
| His[H] |
30 |
2.6% |
| Ile[I] |
71 |
6.2% |
| Leu[L] |
98 |
8.5% |
| Lys[K] |
98 |
8.5% |
| Met[M] |
25 |
2.2% |
| Phe[F] |
48 |
4.2% |
| Pro[P] |
49 |
4.3% |
| Ser[S] |
86 |
7.5% |
| Thr[T] |
73 |
6.3% |
| Trp[W] |
13 |
1.1% |
| Tyr[Y] |
29 |
2.5% |
| Val[V] |
43 |
3.7% |
| Total Length |
1151 |
|
| Instability index (II) |
47.60 |
| This classifies the protein as unstable |
|
| Carbon |
5778 |
| Hydrogen |
9136 |
| Nitrogen |
1620 |
| Oxygen |
1788 |
| Sulfur |
49 |
| Total number of atoms |
18371 |
| Formula = C5778H9136N1620O1788S49 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
116085 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
114710 M-1 cm-1 |
| assuming all Cys residues are reduced |
114710 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
116210 M-1 cm-1 |
|
|
| Codon Bias |
0.000 |
| Codon Adaptation Index |
0.000 |
| Frequency of Optimal Codons |
0.000 |
| Hydropathicity of Protein |
0.000 |
| Aromaticity Score |
0.000 |
|
