Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
25 |
5.1% |
| Arg[R] |
22 |
4.5% |
| Asn[N] |
40 |
8.2% |
| Asp[D] |
26 |
5.3% |
| Cys[C] |
0 |
0.0% |
| Gln[Q] |
23 |
4.7% |
| Glu[E] |
37 |
7.6% |
| Gly[G] |
27 |
5.6% |
| His[H] |
18 |
3.7% |
| Ile[I] |
23 |
4.7% |
| Leu[L] |
45 |
9.3% |
| Lys[K] |
24 |
4.9% |
| Met[M] |
14 |
2.9% |
| Phe[F] |
13 |
2.7% |
| Pro[P] |
27 |
5.6% |
| Ser[S] |
65 |
13.4% |
| Thr[T] |
27 |
5.6% |
| Trp[W] |
1 |
0.2% |
| Tyr[Y] |
16 |
3.3% |
| Val[V] |
13 |
2.7% |
| Total Length |
486 |
|
| Instability index (II) |
54.66 |
| This classifies the protein as unstable |
|
| Carbon |
2330 |
| Hydrogen |
3664 |
| Nitrogen |
676 |
| Oxygen |
784 |
| Sulfur |
14 |
| Total number of atoms |
7468 |
| Formula = C2330H3664N676O784S14 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
29340 M-1 cm-1 |
|
|
| Codon Bias |
0.079 |
| Codon Adaptation Index |
0.147 |
| Frequency of Optimal Codons |
0.444 |
| Hydropathicity of Protein |
-0.824 |
| Aromaticity Score |
0.062 |
|
