Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
125 |
9.1% |
| Arg[R] |
38 |
2.8% |
| Asn[N] |
111 |
8.0% |
| Asp[D] |
81 |
5.9% |
| Cys[C] |
3 |
0.2% |
| Gln[Q] |
107 |
7.7% |
| Glu[E] |
111 |
8.0% |
| Gly[G] |
51 |
3.7% |
| His[H] |
21 |
1.5% |
| Ile[I] |
53 |
3.8% |
| Leu[L] |
117 |
8.5% |
| Lys[K] |
71 |
5.1% |
| Met[M] |
20 |
1.4% |
| Phe[F] |
46 |
3.3% |
| Pro[P] |
81 |
5.9% |
| Ser[S] |
148 |
10.7% |
| Thr[T] |
106 |
7.7% |
| Trp[W] |
8 |
0.6% |
| Tyr[Y] |
14 |
1.0% |
| Val[V] |
69 |
5.0% |
| Total Length |
1381 |
|
| Instability index (II) |
48.12 |
| This classifies the protein as unstable |
|
| Carbon |
6490 |
| Hydrogen |
10294 |
| Nitrogen |
1834 |
| Oxygen |
2252 |
| Sulfur |
23 |
| Total number of atoms |
20893 |
| Formula = C6490H10294N1834O2252S23 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
64985 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
64860 M-1 cm-1 |
| assuming all Cys residues are reduced |
64860 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
64985 M-1 cm-1 |
|
|
| Codon Bias |
0.192 |
| Codon Adaptation Index |
0.197 |
| Frequency of Optimal Codons |
0.517 |
| Hydropathicity of Protein |
-0.685 |
| Aromaticity Score |
0.049 |
|
