Physico-chemical properties were determined using the
ProtParam tool available
through ExPASy to analyze the
primary protein sequence for atomic composition, extinction coefficient,
estimated half-life, instability index and aliphatic index. Transcript
translation calculations were determined using
CodonW.
| Ala[A] |
4 |
6.0% |
| Arg[R] |
1 |
1.5% |
| Asn[N] |
6 |
9.0% |
| Asp[D] |
1 |
1.5% |
| Cys[C] |
1 |
1.5% |
| Gln[Q] |
2 |
3.0% |
| Glu[E] |
0 |
0.0% |
| Gly[G] |
4 |
6.0% |
| His[H] |
1 |
1.5% |
| Ile[I] |
0 |
0.0% |
| Leu[L] |
7 |
10.4% |
| Lys[K] |
2 |
3.0% |
| Met[M] |
3 |
4.5% |
| Phe[F] |
3 |
4.5% |
| Pro[P] |
4 |
6.0% |
| Ser[S] |
8 |
11.9% |
| Thr[T] |
6 |
9.0% |
| Trp[W] |
1 |
1.5% |
| Tyr[Y] |
9 |
13.4% |
| Val[V] |
4 |
6.0% |
| Total Length |
67 |
|
| Instability index (II) |
52.01 |
| This classifies the protein as unstable |
|
| Carbon |
349 |
| Hydrogen |
507 |
| Nitrogen |
83 |
| Oxygen |
101 |
| Sulfur |
4 |
| Total number of atoms |
1044 |
| Formula = C349H507N83O101S4 |
|
| Escherichia coli (in vivo) |
>10 hours |
| mammalian reticulocytes (in vitro) |
30 hours |
| yeast (in vivo) |
>20 hours |
|
| assuming ALL Cys residues appear as half cystines |
18910 M-1 cm-1 |
| assuming NO Cys residues appear as half cystines |
18910 M-1 cm-1 |
| assuming all Cys residues are reduced |
18910 M-1 cm-1 |
| assuming all pairs of Cys residues form cystines |
18910 M-1 cm-1 |
|
|
| Codon Bias |
-0.169 |
| Codon Adaptation Index |
0.071 |
| Frequency of Optimal Codons |
0.286 |
| Hydropathicity of Protein |
-0.164 |
| Aromaticity Score |
0.194 |
|
