YGR038C-B Protein Information Help

Systematic Name Ygr038c-bp
Description Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes (1, 2)
Predicted Sequence Formatted Sequence or sequence in FASTA format
Length (a.a.) 1,755
Molecular Weight (Da) 198,520
Isoelectric Point (pI) 8.35

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Post-translational Modifications PhosphoGRID
Domains/motifs See the graphical view and list of proteins that share domains/motifs in common with Ygr038c-bp (InterPro)
Physical Interactions There are 4 total physical interactions (BioGRID)
Homologs PDB Homologs | BLASTP | BLASTP v. fungi | Fungal Alignment | Synteny Viewer
External Sequence Databases EBI: UPI000006AA1A | Q12269
NCBI: 134034964 | 1945315 | 1945316 | 7839173 | NP_058160.1 | NM_001184434.1
GenBank/EMBL/DDBJ: CAA97027.1 | CAA97035.1 | DAA08137.1 | Z72823 | Z72824
External Classifications EC: 2.7.7.49 [RNA-directed DNA polymerase]
EC: 2.7.7.7 [DNA-directed DNA polymerase]
EC: 3.1.26.4 [Ribonuclease H]
EC: 3.4.23.- [Aspartic Endopeptidases]
Amino Acid Sequence (or in FASTA format)
       1  MESQQLSQHS HISHGSACAS VTSKEVHTNQ DPLDVSASKI QEYDKASTKA
      51  NSQQTTTPAS SAVPENPHHA SPQPASVPPP QNGPYPQQCM MTQNQANPSG
     101  WSFYGHPSMI PYTPYQMSPM YFPPGPQSQF PQYPSSVGTP LSTPSPESGN
     151  TFTDSSSADS DMTSTKKYVR PPPMLTSPND FPNWVKTYIK FLQNSNLGGI
     201  IPTVNGKPVR QITDDELTFL YNTFQIFAPS QFLPTWVKDI LSVDYTDIMK
     251  ILSKSIEKMQ SDTQEANDIV TLANLQYNGS TPADAFETKV TNIIDRLNNN
     301  GIHINNKVAC QLIMRGLSGE YKFLRYTRHR HLNMTVAELF LDIHAIYEEQ
     351  QGSRNSKPNY RRNPSDEKND SRSYTNTTKP KVIARNPQKT NNSKSKTARA
     401  HNVSTSNNSP STDNDSISKS TTEPIQLNNK HDLHLGQELT ESTVNHTNHS
     451  DDELPGHLLL DSGASRTLIR SAHHIHSASS NPGINVVDAQ KRNIPINAIG
     501  DLQFHFQDNT KTSIKVLHTP NIAYDLLSLN ELAAVDITAC FTKNVLERSD
     551  GTVLAPIVKY GDFYWVSKKY LLPSNISVPT INNVHTSEST RKYPYPFIHR
     601  MLAHANAQTI RYSLKNNTIT YFNESDVDWS SAIDYQCPDC LIGKSTKHRH
     651  IKGSRLKYQN SYEPFQYLHT DIFGPVHNLP NSAPSYFISF TDETTKFRWV
     701  YPLHDRREDS ILDVFTTILA FIKNQFQASV LVIQMDRGSE YTNRTLHKFL
     751  EKNGITPCYT TTADSRAHGV AERLNRTLLD DCRTQLQCSG LPNHLWFSAI
     801  EFSTIVRNSL ASPKSKKSAR QHAGLAGLDI STLLPFGQPV IVNDHNPNSK
     851  IHPRGIPGYA LHPSRNSYGY IIYLPSLKKT VDTTNYVILQ GKESRLDQFN
     901  YDALTFDEDL NRLTASYHSF IASNEIQESN DLNIESDHDF QSDIELHPEQ
     951  PRNVLSKAVS PTDSTPPSTH TEDSKRVSKT NIRAPREVDP NISESNILPS
    1001  KKRSSTPQIS NIESTGSGGM HKLNVPLLAP MSQSNTHESS HASKSKDFRH
    1051  SDSYSENETN HTNVPISSTG GTNNKTVPQI SDQETEKRII HRSPSIDASP
    1101  PENNSSHNIV PIKTPTTVSE QNTEESIIAD LPLPDLPPES PTEFPDPFKE
    1151  LPPINSHQTN SSLGGIGDSN AYTTINSKKR SLEDNETEIK VSRDTWNTKN
    1201  MRSLEPPRSK KRIHLIAAVK AVKSIKPIRT TLRYDEAITY NKDIKEKEKY
    1251  IEAYHKEVNQ LLKMNTWDTD KYYDRKEIDP KRVINSMFIF NRKRDGTHKA
    1301  RFVARGDIQH PDTYDSGMQS NTVHHYALMT SLSLALDNNY YITQLDISSA
    1351  YLYADIKEEL YIRPPPHLGM NDKLIRLKKS LYGLKQSGAN WYETIKSYLI
    1401  KQCGMEEVRG WSCVFKNSQV TICLFVDDMI LFSKDLNANK KIITTLKKQY
    1451  DTKIINLGES DNEIQYDILG LEIKYQRGKY MKLGMENSLT EKIPKLNVPL
    1501  NPKGRKLSAP GQPGLYIDQD ELEIDEDEYK EKVHEMQKLI GLASYVGYKF
    1551  RFDLLYYINT LAQHILFPSR QVLDMTYELI QFMWDTRDKQ LIWHKNKPTE
    1601  PDNKLVAISD ASYGNQPYYK SQIGNIFLLN GKVIGGKSTK ASLTCTSTTE
    1651  AEIHAVSEAI PLLNNLSHLV QELNKKPIIK GLLTDSRSTI SIIKSTNEEK
    1701  FRNRFFGTKA MRLRDEVSGN NLYVYYIETK KNIADVMTKP LPIKTFKLLT
    1751  NKWIH*                                                

external links for Ygr038c-bp
Homologs Interaction Resources Protein databases/Other Localization Resources
BLASTP (NCBI) BioGRID SCOP Superfamily YeastGFP
Pfam domains

1) Kim JM, et al.  (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78
2) Lesage P and Todeschini AL  (2005) Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet Genome Res 110(1-4):70-90