YFL002W-B Protein Information Help

Systematic Name Yfl002w-bp
Description Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag (1, 2)
Predicted Sequence Formatted Sequence or sequence in FASTA format
Length (a.a.) 438
Molecular Weight (Da) 49,762
Isoelectric Point (pI) 7.16

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Post-translational Modifications PhosphoGRID
Domains/motifs See the graphical view and list of proteins that share domains/motifs in common with Yfl002w-bp (InterPro)
Physical Interactions There are 2 total physical interactions (BioGRID)
Homologs PDB Homologs | BLASTP | BLASTP v. fungi | Fungal Alignment | Synteny Viewer
External Sequence Databases EBI: UPI000006B914 | P0CX61
NCBI: 338819754 | 7839169 | 7839175 | 836752 | NP_058157.1 | NP_058164.1 | NM_001184401.1 | NM_001184430.1
GenBank/EMBL/DDBJ: BAA09236.1 | DAA12438.1 | D50617
Amino Acid Sequence (or in FASTA format)
       1  MESQQLHQNP HSLHGSAYAS VTSKEVPSNQ DPLAVSASNL PEFDRDSTKV
      51  NSQQETTPGT SAVPENHHHV SPQPASVPPP QNGQYQQHGM MTPNKAMASN
     101  WAHYQQPSMM TCSHYQTSPA YYQPDPHYPL PQYIPPLSTS SPDPIDSQNQ
     151  HSEVPQAETK VRNNVLPPHT LTSEENFSTW VKFYIRFLKN SNLGDIIPND
     201  QGEIKSQMTY EEHAYIYNTF QAFAPFHLLP TWVKQILEIN YADILTVLCK
     251  SVSKMQTNNQ ELKDWIALAN LEYDGSTSAD TFEITVSTII QRLKENNINV
     301  SDRLACQLIL KGLSGDFKYL RNQYRTKTNM KLSQLFAEIQ LIYDENKIMN
     351  LNKPSQYKQH SEYKNVSRTS PNTTNTKVTT RNYHRTNSSK PRAAKAHNIA
     401  TSSKFSRVNN DHINESTVSS QYLSDDNELS LRPATERI*            

external links for Yfl002w-bp
Homologs Interaction Resources Protein databases/Other Localization Resources
BLASTP (NCBI) BioGRID SCOP Superfamily YeastGFP
Pfam domains

1) Kim JM, et al.  (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78
2) Lesage P and Todeschini AL  (2005) Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet Genome Res 110(1-4):70-90