YNL284C-A Protein Information

Systematic Name	Ynl284c-ap
Description	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag (1, 2)

Predicted Sequence	Formatted Sequence or sequence in FASTA format
Length (a.a.)	440
Molecular Weight (Da)	49,308
Isoelectric Point (pI)	8.51

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Post-translational Modifications	PhosphoGRID
Domains/motifs	See the graphical view and list of proteins that share domains/motifs in common with Ynl284c-ap (InterPro)
Physical Interactions	There are 19 total physical interactions (BioGRID)
Homologs	PDB Homologs \| BLASTP \| BLASTP v. fungi \| Fungal Alignment \| Synteny Viewer
External Sequence Databases	EBI: UPI000006A9A3 \| Q12391 NCBI: 1302360 \| 1302365 \| 74583840 \| 7839193 \| NP_058179.1 \| NM_001184414.1 GenBank/EMBL/DDBJ: DAA10275.1 \| Z71560 \| Z71561

Amino Acid Sequence (or in FASTA format)
1 MESQQLSQHS PISHGSACAS VTSKEVHTNQ DPLDVSASKI QEYDKASTKA 51 NSQQTTTPAS SAVPENPHHA SPQTAQSHSP QNGPYQQQCM MTQNQANPSG 101 WSFYGRPSMI PYTPYQMSPM YFPPGPHSQF PQYPSSVGTP LSTPSPESGN 151 TFTDSSSADS DMTSTKKYVR PPPMLTSPND FLNWVKTYIK FLQNSNLGDI 201 IPTATRKAVR QMTDDELTFL CHTFQLFAPS QFLPTWVKDI LSADYTDIMK 251 ILSKSINKMQ SDTQEVNDIT TLATLHYNGS TPADAFEAEV TNILDRLNNN 301 GIPINNKVAC QFIMRGLSGE YKFLRYARHR YIHMTVADLF SDIHSMYEEQ 351 QESKRNKSTY RRNPSDEKKD SRTYTNTTKP KSITRNSQKP NNSQSRTARA 401 HNVSTSNNSS GPDNDLIRGS TTEPIQLKNK HDLHLRPGTY *

Amino Acid Sequence (or in FASTA format)

       1  MESQQLSQHS PISHGSACAS VTSKEVHTNQ DPLDVSASKI QEYDKASTKA
      51  NSQQTTTPAS SAVPENPHHA SPQTAQSHSP QNGPYQQQCM MTQNQANPSG
     101  WSFYGRPSMI PYTPYQMSPM YFPPGPHSQF PQYPSSVGTP LSTPSPESGN
     151  TFTDSSSADS DMTSTKKYVR PPPMLTSPND FLNWVKTYIK FLQNSNLGDI
     201  IPTATRKAVR QMTDDELTFL CHTFQLFAPS QFLPTWVKDI LSADYTDIMK
     251  ILSKSINKMQ SDTQEVNDIT TLATLHYNGS TPADAFEAEV TNILDRLNNN
     301  GIPINNKVAC QFIMRGLSGE YKFLRYARHR YIHMTVADLF SDIHSMYEEQ
     351  QESKRNKSTY RRNPSDEKKD SRTYTNTTKP KSITRNSQKP NNSQSRTARA
     401  HNVSTSNNSS GPDNDLIRGS TTEPIQLKNK HDLHLRPGTY *

external links for Ynl284c-ap

Homologs	Interaction Resources	Protein databases/Other	Localization Resources
BLASTP (NCBI)	BioGRID	SCOP Superfamily	YeastGFP
Pfam domains

References cited on this page View Complete Literature Guide for Ynl284c-ap

1)	Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78
2)	Lesage P and Todeschini AL (2005) Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet Genome Res 110(1-4):70-90