YNL054W-B Protein Information

Systematic Name	Ynl054w-bp
Description	TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition ()

Predicted Sequence	Formatted Sequence or sequence in FASTA format
Length (a.a.)	1,749
Molecular Weight (Da)	198,196
Isoelectric Point (pI)	8.98

Click on image for expanded interactive view

Post-translational Modifications	PhosphoGRID
Domains/motifs	See the graphical view and list of proteins that share domains/motifs in common with Ynl054w-bp (InterPro)
Physical Interactions	There are 4 total physical interactions (BioGRID)
Homologs	PDB Homologs \| BLASTP \| BLASTP v. fungi \| Fungal Alignment \| Synteny Viewer
External Sequence Databases	EBI: UPI000006B162 \| Q99337 NCBI: 1301920 \| 1301925 \| 74638323 GenBank/EMBL/DDBJ: Z71330 \| Z71331
External Classifications	EC: 2.7.7.49 [RNA-directed DNA polymerase] EC: 2.7.7.7 [DNA-directed DNA polymerase] EC: 3.1.26.4 [Ribonuclease H] EC: 3.4.23.- [Aspartic Endopeptidases]

Amino Acid Sequence (or in FASTA format)
1 MESQQLSQHS PISHGSACAS VTSKEVHTNQ DPLDVSASKI QEYDKASTKA 51 NSQQTTTPAS SAVPENPHHA SPQTAQSHSP QNGPYPQQCM MTQNQANPSD 101 WSFYGRPSMI PYTPYQMSPM YFPPGPHSQF PQYPSSVGTP LSTPSPESGN 151 TFTDSSSADS DMTSTKKYVR PPPMLTSPND FLNWVKTYIK FLQNSNLGGI 201 IPTVNGKPVR QITDDELTFL YNTFQIFAPS QFLPTWVKDI LSVDYTDIMK 251 ILSKSIEKMQ SDTQEANDIV TLANLQYNGS TPADAFETKV TNIIDRLNNN 301 GIHINNKVAC QLIMRGLSGE YKFLRYTRHR HLNMTVAELF LDIHAIYEEQ 351 QGSRNSKPNY RRNPSDEKND SRSYTNTTKP KVIARNPQKT NNSKSKTARA 401 HNVSTSNNSP STDNDSISKS TTEPIQLNNK HDLHLGQKLT ESTVNHTNHS 451 DDELPGHLLL DSGASRTLIR SAHHIHSASS NPDINVVDAQ KRNIPINAIG 501 DLQFHFQDNT KTSIKVLHTP NIAYDLLSLN ELAAVDITAC FTKNVLERSD 551 GTVLAPIVKY GDFYWVSKKY LLPSNISVPT INNVHTSEST RKYPYPFIHR 601 MLAHANAQTI RYSLKNNTIT YFNESDVDWS SAIDYQCPDC LIGKSTKHRH 651 IKGSRLKYQN SYEPFQYLHT DIFGPVHNLP KSAPSYFISF TDETTKFRWV 701 YPLHDRREDS ILDVFTTILA FIKNQFQASV LVIQMDRGSE YTNRTLHKFL 751 EKNGITPCYT TTADSRAHGV AERLNRTLLD DCRTQLQCSG LPNHLWFSAI 801 EFSTIVRNSL ASPKSKKSAR QHAGLAGLDI STLLPFGQPV IVNDHNPNSK 851 IHPRGIPGYA LHPSRNSYGY IIYLPSLKKT VDTTNYVILQ GKESRLDQFN 901 YDALTFDEDL NRLTASYQSF IASNEIQQSD DLNFQSDIEL HPEQPRNVLS 951 KAVSPTDSTP PSTHTEDSKR VSKTNIRAPR EVDPNISKSD ILPSKKRSST 1001 PQISDIESTG SGGMHRLDVP LLAPMSQSNT HESSHTSKSK DFRHSDSYSD 1051 NETNHTNVPI SSTGGTNNKT VPQTSEQETE KRIIHRSPSI DTSSSESNSL 1101 HHVVPIKTSD TCPKENTEES IIADLPLPDL PPEPPTKLSD SFKELPPINS 1151 RQTNSSLGGI GDSNAYTTIN SKKRSLEDNE TEIKVSRDTW NTKNMRSLEP 1201 PRSKKRIHLI AAVKAVKSIK PIRTTLRYDE AITYNKDIKE KEKYIEAYHK 1251 EVNQLLKMKT WDTDKYYDRK EIDPKRVINS MFIFNRKRDG THKARFVARG 1301 DIQHPDTYDS GMQSNTVHHY ALMTSLSLAL DNNYYITQLD ISSAYLYADI 1351 KEELYIRPPP HLGMNDKLIR LKKSLYGLKQ SGANWYETIK SYLIEQCDME 1401 EVRGWSCVFK NSQVTICLFV DDMILFSKDL NANKKIITTL KKQYDTKIIN 1451 LGESDNEIQY DILGLEIKYQ RSKYMKLGME KSLTEKLPKL NVHLNPKGKK 1501 LSAPGQPGLY IDQDELEIDE DEYKEKVHEM QKLIGLASYV GYKFRFDLLY 1551 YINTLAQHIL FPSRQVLDMT YELIQFMWDT RDKQLIWHKN KPTKPDNKLV 1601 AISDASYGNQ PYYKSQIGNI FLLNGKVIGG KSTKASLTCT STTEAEIHAV 1651 SEAIPLLNNL SHLVQELNKK PIIKGLLTDS RSTISIIKST NEEKFRNRFF 1701 GTKAMRLRDE VSGNNLYVYY IETKKNIADV MTKPLPIKTF KLLTNKWIH*

Amino Acid Sequence (or in FASTA format)

       1  MESQQLSQHS PISHGSACAS VTSKEVHTNQ DPLDVSASKI QEYDKASTKA
      51  NSQQTTTPAS SAVPENPHHA SPQTAQSHSP QNGPYPQQCM MTQNQANPSD
     101  WSFYGRPSMI PYTPYQMSPM YFPPGPHSQF PQYPSSVGTP LSTPSPESGN
     151  TFTDSSSADS DMTSTKKYVR PPPMLTSPND FLNWVKTYIK FLQNSNLGGI
     201  IPTVNGKPVR QITDDELTFL YNTFQIFAPS QFLPTWVKDI LSVDYTDIMK
     251  ILSKSIEKMQ SDTQEANDIV TLANLQYNGS TPADAFETKV TNIIDRLNNN
     301  GIHINNKVAC QLIMRGLSGE YKFLRYTRHR HLNMTVAELF LDIHAIYEEQ
     351  QGSRNSKPNY RRNPSDEKND SRSYTNTTKP KVIARNPQKT NNSKSKTARA
     401  HNVSTSNNSP STDNDSISKS TTEPIQLNNK HDLHLGQKLT ESTVNHTNHS
     451  DDELPGHLLL DSGASRTLIR SAHHIHSASS NPDINVVDAQ KRNIPINAIG
     501  DLQFHFQDNT KTSIKVLHTP NIAYDLLSLN ELAAVDITAC FTKNVLERSD
     551  GTVLAPIVKY GDFYWVSKKY LLPSNISVPT INNVHTSEST RKYPYPFIHR
     601  MLAHANAQTI RYSLKNNTIT YFNESDVDWS SAIDYQCPDC LIGKSTKHRH
     651  IKGSRLKYQN SYEPFQYLHT DIFGPVHNLP KSAPSYFISF TDETTKFRWV
     701  YPLHDRREDS ILDVFTTILA FIKNQFQASV LVIQMDRGSE YTNRTLHKFL
     751  EKNGITPCYT TTADSRAHGV AERLNRTLLD DCRTQLQCSG LPNHLWFSAI
     801  EFSTIVRNSL ASPKSKKSAR QHAGLAGLDI STLLPFGQPV IVNDHNPNSK
     851  IHPRGIPGYA LHPSRNSYGY IIYLPSLKKT VDTTNYVILQ GKESRLDQFN
     901  YDALTFDEDL NRLTASYQSF IASNEIQQSD DLNFQSDIEL HPEQPRNVLS
     951  KAVSPTDSTP PSTHTEDSKR VSKTNIRAPR EVDPNISKSD ILPSKKRSST
    1001  PQISDIESTG SGGMHRLDVP LLAPMSQSNT HESSHTSKSK DFRHSDSYSD
    1051  NETNHTNVPI SSTGGTNNKT VPQTSEQETE KRIIHRSPSI DTSSSESNSL
    1101  HHVVPIKTSD TCPKENTEES IIADLPLPDL PPEPPTKLSD SFKELPPINS
    1151  RQTNSSLGGI GDSNAYTTIN SKKRSLEDNE TEIKVSRDTW NTKNMRSLEP
    1201  PRSKKRIHLI AAVKAVKSIK PIRTTLRYDE AITYNKDIKE KEKYIEAYHK
    1251  EVNQLLKMKT WDTDKYYDRK EIDPKRVINS MFIFNRKRDG THKARFVARG
    1301  DIQHPDTYDS GMQSNTVHHY ALMTSLSLAL DNNYYITQLD ISSAYLYADI
    1351  KEELYIRPPP HLGMNDKLIR LKKSLYGLKQ SGANWYETIK SYLIEQCDME
    1401  EVRGWSCVFK NSQVTICLFV DDMILFSKDL NANKKIITTL KKQYDTKIIN
    1451  LGESDNEIQY DILGLEIKYQ RSKYMKLGME KSLTEKLPKL NVHLNPKGKK
    1501  LSAPGQPGLY IDQDELEIDE DEYKEKVHEM QKLIGLASYV GYKFRFDLLY
    1551  YINTLAQHIL FPSRQVLDMT YELIQFMWDT RDKQLIWHKN KPTKPDNKLV
    1601  AISDASYGNQ PYYKSQIGNI FLLNGKVIGG KSTKASLTCT STTEAEIHAV
    1651  SEAIPLLNNL SHLVQELNKK PIIKGLLTDS RSTISIIKST NEEKFRNRFF
    1701  GTKAMRLRDE VSGNNLYVYY IETKKNIADV MTKPLPIKTF KLLTNKWIH*

external links for Ynl054w-bp

Homologs	Interaction Resources	Protein databases/Other	Localization Resources
BioGRID	SCOP Superfamily	YeastGFP
DIP	Pfam domains