YHL009W-A Protein Information

Systematic Name	Yhl009w-ap
Description	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag (1, 2)

Predicted Sequence	Formatted Sequence or sequence in FASTA format
Length (a.a.)	413
Molecular Weight (Da)	48,214
Isoelectric Point (pI)	8.24

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Post-translational Modifications	PhosphoGRID
Domains/motifs	See the graphical view and list of proteins that share domains/motifs in common with Yhl009w-ap (InterPro)
Physical Interactions	There are 14 total physical interactions (BioGRID)
Homologs	PDB Homologs \| BLASTP \| BLASTP v. fungi \| Fungal Alignment \| Synteny Viewer
External Sequence Databases	EBI: UPI000016833D \| Q6Q5P6 NCBI: 45269569 \| 74611733 \| 7839179 \| NP_058134.1 GenBank/EMBL/DDBJ: DAA06679.1 \| AY557839 \| U11581

Amino Acid Sequence (or in FASTA format)
1 MATPVRDETR NVIDDNISAR IQSKVKTNDT VRQTPSSLRK VSIKDEQVKQ 51 YQRNLNRFKT ILNGLKAEEE KLSETDDIQM LAEKLLKLGE TIDKVENRIV 101 DLVEKIQLLE TNENNNILHE HIDATGTYYL FDTLTSTNKR FYPKDCVFDY 151 RTNNVENIPI LLNNFKKFIK KYQFDDVFEN DIIEIDPREN EILCKIIKEG 201 LGESLDIMNT NTTDIFRIID GLKNKYRSLH GRDVRIRAWE KVLVDTTCRN 251 SALLMNKLQK LVLMEKWIFS KCCQDCPNLK DYLQEAIMGT LHESLRNSVK 301 QRLYNIPHNV GINHEEFLIN TVIETVIDLS PIADDQIENS CMYCKSVFHC 351 SINCKKKPNR ELRPDSTNFS KTYYLQGAQR QQQLKSSAKR TKVLEQDTKK 401 VKQSVQQQKT GNY*

Amino Acid Sequence (or in FASTA format)

       1  MATPVRDETR NVIDDNISAR IQSKVKTNDT VRQTPSSLRK VSIKDEQVKQ
      51  YQRNLNRFKT ILNGLKAEEE KLSETDDIQM LAEKLLKLGE TIDKVENRIV
     101  DLVEKIQLLE TNENNNILHE HIDATGTYYL FDTLTSTNKR FYPKDCVFDY
     151  RTNNVENIPI LLNNFKKFIK KYQFDDVFEN DIIEIDPREN EILCKIIKEG
     201  LGESLDIMNT NTTDIFRIID GLKNKYRSLH GRDVRIRAWE KVLVDTTCRN
     251  SALLMNKLQK LVLMEKWIFS KCCQDCPNLK DYLQEAIMGT LHESLRNSVK
     301  QRLYNIPHNV GINHEEFLIN TVIETVIDLS PIADDQIENS CMYCKSVFHC
     351  SINCKKKPNR ELRPDSTNFS KTYYLQGAQR QQQLKSSAKR TKVLEQDTKK
     401  VKQSVQQQKT GNY*

external links for Yhl009w-ap

Homologs	Interaction Resources	Protein databases/Other	Localization Resources
BLASTP (NCBI)	BioGRID	SCOP Superfamily	YeastGFP
Pfam domains

References cited on this page View Complete Literature Guide for Yhl009w-ap

1)	Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78
2)	Lesage P and Todeschini AL (2005) Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet Genome Res 110(1-4):70-90