YOR343W-A Protein Information

Systematic Name	Yor343w-ap
Alias	Yor343c-ap
Description	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag (1, 2)

Predicted Sequence	Formatted Sequence or sequence in FASTA format
Length (a.a.)	438
Molecular Weight (Da)	49,867
Isoelectric Point (pI)	7.52

Click on image for expanded interactive view

Post-translational Modifications	PhosphoGRID
Domains/motifs	See the graphical view and list of proteins that share domains/motifs in common with Yor343w-ap (InterPro)
Physical Interactions	There are 2 total physical interactions (BioGRID)
Homologs	PDB Homologs \| BLASTP \| BLASTP v. fungi \| Fungal Alignment \| Synteny Viewer
External Sequence Databases	EBI: UPI000006B2ED \| Q12293 NCBI: 1420746 \| 1420749 \| 20336769 \| 74655041 \| NP_620390.1 GenBank/EMBL/DDBJ: DAA11105.1 \| Z75251 \| Z75252

Amino Acid Sequence (or in FASTA format)
1 MESQQLHQNP HCPHGSAYAS VTSKEVPSNQ DPLAVSASNL PEFDRDSTKV 51 NSQEETTPGT SAVPENHHHV SPQPASVPPP QNGQYQQHGM MTPNKAMASN 101 WAHYQQPSMM TCSHYQTSPA YYQPDPHYPL PQYIPPLSTS SPDPIDSQDQ 151 HSEVPQAKTK VRNNVLPPHP HTSEENFSTW VKFYIRFLKN SNLGDIIPND 201 QGEIKRQMTY EEHAYIYNTF QAFAPFHLLP TWVKQILEIN YSDILTVLCK 251 SVSKMQTNNQ ELKDWIALAN LEYNGSTSAD TFEITVSTII QRLKENNINV 301 SDRLACQLIL KGLSGDFKYL RNQYRTKTNM KLSQLFAEIQ LIYDENKIMN 351 LNKPSQYKQH SEYKNVSRTS PNTTNTKVTT RNYHRTNSSK PRAAKAHNIA 401 TSSKFSRVNN DHINESTVSS QYLSDDNELS LRPATERI*

Amino Acid Sequence (or in FASTA format)

       1  MESQQLHQNP HCPHGSAYAS VTSKEVPSNQ DPLAVSASNL PEFDRDSTKV
      51  NSQEETTPGT SAVPENHHHV SPQPASVPPP QNGQYQQHGM MTPNKAMASN
     101  WAHYQQPSMM TCSHYQTSPA YYQPDPHYPL PQYIPPLSTS SPDPIDSQDQ
     151  HSEVPQAKTK VRNNVLPPHP HTSEENFSTW VKFYIRFLKN SNLGDIIPND
     201  QGEIKRQMTY EEHAYIYNTF QAFAPFHLLP TWVKQILEIN YSDILTVLCK
     251  SVSKMQTNNQ ELKDWIALAN LEYNGSTSAD TFEITVSTII QRLKENNINV
     301  SDRLACQLIL KGLSGDFKYL RNQYRTKTNM KLSQLFAEIQ LIYDENKIMN
     351  LNKPSQYKQH SEYKNVSRTS PNTTNTKVTT RNYHRTNSSK PRAAKAHNIA
     401  TSSKFSRVNN DHINESTVSS QYLSDDNELS LRPATERI*

external links for Yor343w-ap

Homologs	Interaction Resources	Protein databases/Other	Localization Resources
BLASTP (NCBI)	BioGRID	SCOP Superfamily	YeastGFP
Pfam domains

References cited on this page View Complete Literature Guide for Yor343w-ap

1)	Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78
2)	Lesage P and Todeschini AL (2005) Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet Genome Res 110(1-4):70-90