YGR109W-B Protein Information

Systematic Name	Ygr109w-bp
Description	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes (1, 2)

Predicted Sequence	Formatted Sequence or sequence in FASTA format
Length (a.a.)	1,547
Molecular Weight (Da)	178,418
Isoelectric Point (pI)	9.43

Click on image for expanded interactive view

Post-translational Modifications	PhosphoGRID
Domains/motifs	See the graphical view and list of proteins that share domains/motifs in common with Ygr109w-bp (InterPro)
Physical Interactions	There are 1 total physical interactions (BioGRID)
Homologs	PDB Homologs \| BLASTP \| BLASTP v. fungi \| Fungal Alignment \| Synteny Viewer
External Sequence Databases	EBI: UPI000006951C \| Q99315 NCBI: 134034966 \| 1945323 \| 1945324 \| 536873 \| 6321547 \| 808854 \| NP_011624.1 GenBank/EMBL/DDBJ: DAA08202.1 \| M18353 \| M34549 \| Z72894 \| Z72895
External Classifications	EC: 2.7.7.49 [RNA-directed DNA polymerase] EC: 2.7.7.7 [DNA-directed DNA polymerase] EC: 3.1.26.4 [Ribonuclease H] EC: 3.4.23.- [Aspartic Endopeptidases]

Amino Acid Sequence (or in FASTA format)
1 MSFMDQIPGG GNYPKLPVEC LPNFPIQPSL TFRGRNDSHK LKNFISEIML 51 NMSMISWPND ASRIVYCRRH LLNPAAQWAN DFVQEQGILE ITFDTFIQGL 101 YQHFYKPPDI NKIFNAITQL SEAKLGIERL NQRFRKIWDR MPPDFMTEKA 151 AIMTYTRLLT KETYNIVRMH KPETLKDAME EAYQTTALTE RFFPGFELDA 201 DGDTIIGATT HLQEEYDSDY DSEDNLTQNG YVHTVRTRRS YNKPMSNHRN 251 RRNNNPSREE CIKNRLCFYC KKEGHRLNEC RARRRVLTDL ELESKDQQTP 301 FIKTLPIVHY IAIPEMDNTA EKTIKIQNTK VKTLFDSGSP TSFIRRDIVE 351 LLKYEIYETP PLRFRGFVAT KSAVTSEAVT IDLKINDLHI TLAAYILDNM 401 DYQLLIGNPI LRRYPKILHT VLNTRESPDS LKPKTYRSET VNNVRTYSAG 451 NRGNPRNIKL SFAPTILEAT DPKSAGNRGD SRTKTLSLAT TTPAAIDPLT 501 TLDNPGSTQS TFAQFPIPEE ASILEEDGKY SNVVSTIQSV EPNATDHSNK 551 DTFCTLPVWL QQKYREIIRN DLPPRPADIN NIPVKHDIEI KPGARLPRLQ 601 PYHVTEKNEQ EINKIVQKLL DNKFIVPSKS PCSSPVVLVP KKDGTFRLCV 651 DYRTLNKATI SDPFPLPRID NLLSRIGNAQ IFTTLDLHSG YHQIPMEPKD 701 RYKTAFVTPS GKYEYTVMPF GLVNAPSTFA RYMADTFRDL RFVNVYLDDI 751 LIFSESPEEH WKHLDTVLER LKNENLIVKK KKCKFASEET EFLGYSIGIQ 801 KIAPLQHKCA AIRDFPTPKT VKQAQRFLGM INYYRRFIPN CSKIAQPIQL 851 FICDKSQWTE KQDKAIDKLK DALCNSPVLV PFNNKANYRL TTDASKDGIG 901 AVLEEVDNKN KLVGVVGYFS KSLESAQKNY PAGELELLGI IKALHHFRYM 951 LHGKHFTLRT DHISLLSLQN KNEPARRVQR WLDDLATYDF TLEYLAGPKN 1001 VVADAISRAV YTITPETSRP IDTESWKSYY KSDPLCSAVL IHMKELTQHN 1051 VTPEDMSAFR SYQKKLELSE TFRKNYSLED EMIYYQDRLV VPIKQQNAVM 1101 RLYHDHTLFG GHFGVTVTLA KISPIYYWPK LQHSIIQYIR TCVQCQLIKS 1151 HRPRLHGLLQ PLPIAEGRWL DISMDFVTGL PPTSNNLNMI LVVVDRFSKR 1201 AHFIATRKTL DATQLIDLLF RYIFSYHGFP RTITSDRDVR MTADKYQELT 1251 KRLGIKSTMS SANHPQTDGQ SERTIQTLNR LLRAYASTNI QNWHVYLPQI 1301 EFVYNSTPTR TLGKSPFEID LGYLPNTPAI KSDDEVNARS FTAVELAKHL 1351 KALTIQTKEQ LEHAQIEMET NNNQRRKPLL LNIGDHVLVH RDAYFKKGAY 1401 MKVQQIYVGP FRVVKKINDN AYELDLNSHK KKHRVINVQF LKKFVYRPDA 1451 YPKNKPISST ERIKRAHEVT ALIGIDTTHK TYLCHMQDVD PTLSVEYSEA 1501 EFCQIPERTR RSILANFRQL YETQDNPERE EDVVSQNEIC QYDNTSP*

Amino Acid Sequence (or in FASTA format)

       1  MSFMDQIPGG GNYPKLPVEC LPNFPIQPSL TFRGRNDSHK LKNFISEIML
      51  NMSMISWPND ASRIVYCRRH LLNPAAQWAN DFVQEQGILE ITFDTFIQGL
     101  YQHFYKPPDI NKIFNAITQL SEAKLGIERL NQRFRKIWDR MPPDFMTEKA
     151  AIMTYTRLLT KETYNIVRMH KPETLKDAME EAYQTTALTE RFFPGFELDA
     201  DGDTIIGATT HLQEEYDSDY DSEDNLTQNG YVHTVRTRRS YNKPMSNHRN
     251  RRNNNPSREE CIKNRLCFYC KKEGHRLNEC RARRRVLTDL ELESKDQQTP
     301  FIKTLPIVHY IAIPEMDNTA EKTIKIQNTK VKTLFDSGSP TSFIRRDIVE
     351  LLKYEIYETP PLRFRGFVAT KSAVTSEAVT IDLKINDLHI TLAAYILDNM
     401  DYQLLIGNPI LRRYPKILHT VLNTRESPDS LKPKTYRSET VNNVRTYSAG
     451  NRGNPRNIKL SFAPTILEAT DPKSAGNRGD SRTKTLSLAT TTPAAIDPLT
     501  TLDNPGSTQS TFAQFPIPEE ASILEEDGKY SNVVSTIQSV EPNATDHSNK
     551  DTFCTLPVWL QQKYREIIRN DLPPRPADIN NIPVKHDIEI KPGARLPRLQ
     601  PYHVTEKNEQ EINKIVQKLL DNKFIVPSKS PCSSPVVLVP KKDGTFRLCV
     651  DYRTLNKATI SDPFPLPRID NLLSRIGNAQ IFTTLDLHSG YHQIPMEPKD
     701  RYKTAFVTPS GKYEYTVMPF GLVNAPSTFA RYMADTFRDL RFVNVYLDDI
     751  LIFSESPEEH WKHLDTVLER LKNENLIVKK KKCKFASEET EFLGYSIGIQ
     801  KIAPLQHKCA AIRDFPTPKT VKQAQRFLGM INYYRRFIPN CSKIAQPIQL
     851  FICDKSQWTE KQDKAIDKLK DALCNSPVLV PFNNKANYRL TTDASKDGIG
     901  AVLEEVDNKN KLVGVVGYFS KSLESAQKNY PAGELELLGI IKALHHFRYM
     951  LHGKHFTLRT DHISLLSLQN KNEPARRVQR WLDDLATYDF TLEYLAGPKN
    1001  VVADAISRAV YTITPETSRP IDTESWKSYY KSDPLCSAVL IHMKELTQHN
    1051  VTPEDMSAFR SYQKKLELSE TFRKNYSLED EMIYYQDRLV VPIKQQNAVM
    1101  RLYHDHTLFG GHFGVTVTLA KISPIYYWPK LQHSIIQYIR TCVQCQLIKS
    1151  HRPRLHGLLQ PLPIAEGRWL DISMDFVTGL PPTSNNLNMI LVVVDRFSKR
    1201  AHFIATRKTL DATQLIDLLF RYIFSYHGFP RTITSDRDVR MTADKYQELT
    1251  KRLGIKSTMS SANHPQTDGQ SERTIQTLNR LLRAYASTNI QNWHVYLPQI
    1301  EFVYNSTPTR TLGKSPFEID LGYLPNTPAI KSDDEVNARS FTAVELAKHL
    1351  KALTIQTKEQ LEHAQIEMET NNNQRRKPLL LNIGDHVLVH RDAYFKKGAY
    1401  MKVQQIYVGP FRVVKKINDN AYELDLNSHK KKHRVINVQF LKKFVYRPDA
    1451  YPKNKPISST ERIKRAHEVT ALIGIDTTHK TYLCHMQDVD PTLSVEYSEA
    1501  EFCQIPERTR RSILANFRQL YETQDNPERE EDVVSQNEIC QYDNTSP*

external links for Ygr109w-bp

Homologs	Interaction Resources	Protein databases/Other	Localization Resources
BLASTP (NCBI)	BioGRID	SCOP Superfamily	YeastGFP
Pfam domains

References cited on this page View Complete Literature Guide for Ygr109w-bp

1)	Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78
2)	Lesage P and Todeschini AL (2005) Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet Genome Res 110(1-4):70-90