YLR035C-A Protein Information Help

Systematic Name Ylr035c-ap
Description Retrotransposon TYA Gag and TYB Pol genes; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); YLR035C-A is part of a mutant retrotransposon (1, 2)
Experimental Data
Molecules/cell 217 3
Predicted Sequence Formatted Sequence or sequence in FASTA format
Length (a.a.) 1,155
Molecular Weight (Da) 131,616
Isoelectric Point (pI) 9.31

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Post-translational Modifications PhosphoGRID
Domains/motifs See the graphical view and list of proteins that share domains/motifs in common with Ylr035c-ap (InterPro)
Physical Interactions There are 5 total physical interactions (BioGRID)
Homologs PDB Homologs | BLASTP | BLASTP v. fungi | Fungal Alignment | Synteny Viewer
External Sequence Databases EBI: UPI000006A4C2 | Q12088
NCBI: 1360355 | 1360358 | 6323064 | 74627262 | NP_013136.1
GenBank/EMBL/DDBJ: DAA09354.1 | Z73207 | Z73208
External Classifications EC: 2.7.7.49 [RNA-directed DNA polymerase]
EC: 2.7.7.7 [DNA-directed DNA polymerase]
EC: 3.1.26.4 [Ribonuclease H]
EC: 3.4.23.- [Aspartic Endopeptidases]
Amino Acid Sequence (or in FASTA format)
 
       1  MLAHANAQTI RYSLKNNTIT YFNESDVDWS SAIDYQCPDC LIGKSTKHRH
      51  IKGSRLKYQN SYEPFQYLHT DIFGPVHNLP KSAPSYFISF TDETTKFRWV
     101  YPLHDRREDS ILDVFTTILA FIKNQFQASV LVIQMDRGSE YTNRTLHKFL
     151  EKNGITPCYT TTADSRAHGV AERLNRTLLD DCRTQLQCSG LPNHLWFSAI
     201  EFSTIVRNSL ASPKSKKSAR QHAGLAGLDI STLLPFGQPV IVNDHNPNSK
     251  IHPRGIPGYA LHPSRNSYGY IIYLPSLKKT VDTTNYVILQ GKESRLDQFN
     301  YDALTFDEDL NRLTASYQSF IASNEIQQSD DLNIESDHDF QSDIELHPEQ
     351  PRNVLSKAVS PTDSTPPSTH TEDSKRVSKT NIRAPREVDP NISESNILPS
     401  KKRSSTPQIS DIESTGSGGM HRLDVPLLAP MSQSNTHESS HASKSKDFRH
     451  SDSYSDNETN HTNVPISSTG GTNNKTVPQT SEQETEKRII HRSPSIDTSS
     501  SESNSLHHVV PIKTSDTCPK ENTEESIIAD LPLPDLPPEP PTELSDSFKE
     551  LPPINSHQTN SSLGGIGDSN AYTTINSKKR SLEDNETEIK VSRDTWNTKN
     601  MRSLEPPRSK KRIHLIAAVK AVKSIKPIRT TLRYDEAITY NKDIKEKEKY
     651  IQAYHKEVNQ LLKMKTWDTD RYYDRKEIDP KRVINSMFIF NRKRGGTHKA
     701  RFVARGDIQH PDTYDPGMQS NTVHHYALMT SLSLASDNNY YITQLDISSA
     751  YLYADIKEEL YIRPPPHLGM NDKLIRLKKS LYGLKQSGAN WYETIKSYLI
     801  KQCGMEEVRG WSCVFKNSQV TICLFVDDMI LFSKDLNANK KIITTLKKQY
     851  DTKIINLGES DNEIQYDILG LEIKYQRGKY MKLGMENSLT EKIPKLNVPL
     901  NPKGRKLSAP GQPGLYIDQQ ELELEEDDYK MKVHEMQKLI GLASYVGYKF
     951  RFDLLYYINT LAQHILFPSK QVLDMTYELI QFIWNTRDKQ LIWHKSKPVK
    1001  PTNKLVVISD ASYGNQPYYK SQIGNIYLLN GKVIGGKSTK ASLTCTSTTE
    1051  AEIHAISESV PLLNNLSHLV QELNKKPITK GLLTDSKSTI SIIISNNEEK
    1101  FRNRFFGTKA MRLRDEVSGN HLHVCYIETK KNIADVMTKP LPIKTFKLLT
    1151  NKWIH*

external links for Ylr035c-ap
Homologs Interaction Resources Protein databases/Other Localization Resources
BLASTP (NCBI) BioGRID SCOP Superfamily YeastGFP
Pfam domains YeastRC Public Image Repository

References cited on this page View Complete Literature Guide for Ylr035c-ap
1) Kim JM, et al.  (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78
2) Lesage P and Todeschini AL  (2005) Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet Genome Res 110(1-4):70-90
3) Ghaemmaghami S, et al.  (2003) Global analysis of protein expression in yeast. Nature 425(6959):737-41