RPL22B/YFL034C-A Protein Information Help

Standard Name Rpl22bp
Systematic Name Yfl034c-ap
Alias Yfl035c-bp
ORF Classification Verified
Description Ribosomal 60S subunit protein L22B; homologous to mammalian ribosomal protein L22, no bacterial homolog; RPL22B has a paralog, RPL22A, that arose from the whole genome duplication (1, 2, 3, 4, 5)
Name Description Ribosomal Protein of the Large subunit
Gene Product L22B 1 , L22e 5 , YL31 1 , l1c 1 , rp4 1
Experimental Data
Molecules/cell 74700 6
Predicted Sequence Formatted Sequence or sequence in FASTA format
Length (a.a.) 122
Molecular Weight (Da) 13,827
Isoelectric Point (pI) 5.98

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Post-translational Modifications PhosphoGRID | PhosphoPep Database
Domains/motifs See the graphical view and list of proteins that share domains/motifs in common with Rpl22bp (InterPro)
Physical Interactions There are 6 total physical interactions (BioGRID)
Homologs PDB Homologs | BLASTP | BLASTP v. fungi | Fungal Alignment | Synteny Viewer
External Sequence Databases EBI: UPI000016831A | P56628
MIPS: YFL034C-A
NCBI: 14318484 | 6093879 | NP_116619.1
GenBank/EMBL/DDBJ: DAA12406.1 | D50617
Amino Acid Sequence (or in FASTA format)
 
       1  MAPNTSRKQK VIKTLTVDVS SPTENGVFDP ASYSKYLIDH IKVDGAVGNL
      51  GNAIEVTEDG SIVTVVSSAK FSGKYLKYLT KKYLKKNQLR DWIRFVSIRQ
     101  NQYKLVFYQV TPEDADEEED DE*

external links for Rpl22bp
Homologs Interaction Resources Protein databases/Other Localization Resources
BLASTP (NCBI) BioGRID SCOP Superfamily Organelle DB
Ashbya (AGD) BOND GPMdb (Mass Spec.) YPL+
Candida (CGD) BioPIXIE MIPS YeastGFP
YGOB CYC2008 (complexes) Pfam domains YeastRC Public Image Repository
YOGY Complexome YeastRC Structure Prediction (Seattle)

GeneMANIA

References cited on this page View Complete Literature Guide for Rpl22bp
1) Planta RJ and Mager WH  (1998) The list of cytoplasmic ribosomal proteins of Saccharomyces cerevisiae. Yeast 14(5):471-7
2) Lin K, et al.  (2002) Conserved codon composition of ribosomal protein coding genes in Escherichia coli, Mycobacterium tuberculosis and Saccharomyces cerevisiae: lessons from supervised machine learning in functional genomics. Nucleic Acids Res 30(11):2599-607
3) Lecompte O, et al.  (2002) Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale. Nucleic Acids Res 30(24):5382-90
4) Byrne KP and Wolfe KH  (2005) The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res 15(10):1456-61
5) Jenner L, et al.  (2012) Crystal structure of the 80S yeast ribosome. Curr Opin Struct Biol 22(6):759-67
6) Ghaemmaghami S, et al.  (2003) Global analysis of protein expression in yeast. Nature 425(6959):737-41