RRP9/YPR137W Protein Information Help

Standard Name Rrp9p 1
Systematic Name Ypr137wp
ORF Classification Verified
Description Protein involved in pre-rRNA processing, associated with U3 snRNP; component of small ribosomal subunit (SSU) processosome; ortholog of the human U3-55k protein (1)
Name Description Ribosomal RNA Processing 1
Experimental Data
Molecules/cell 5130 2
Predicted Sequence Formatted Sequence or sequence in FASTA format
Length (a.a.) 573
Molecular Weight (Da) 65,053
Isoelectric Point (pI) 5.52

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Post-translational Modifications PhosphoGRID | PhosphoPep Database
Domains/motifs See the graphical view and list of proteins that share domains/motifs in common with Rrp9p (InterPro)
Physical Interactions There are 122 total physical interactions (BioGRID)
Homologs PDB Homologs | BLASTP | BLASTP v. fungi | Fungal Alignment | Synteny Viewer
External Sequence Databases EBI: UPI0000053010 | Q06506
MIPS: YPR137W
NCBI: 1066482 | 6325394 | 74676407 | NP_015463.1
GenBank/EMBL/DDBJ: DAA11549.1 | U40829
Amino Acid Sequence (or in FASTA format)
 
       1  MSDVTQQKKR KRSKGEVNPS KPTVDEEITD PSSNEDEQLE VSDEEDALES
      51  EEEFEGENPA DKRRRLAKQY LENLKSEAND ILTDNRNAEE KDLNNLKERT
     101  IDEYNNFDAG DLDKDIIASR LKEDVAEQQG RVFRYFGDKL LISEAKQSFT
     151  RVGENNLTCI SCFQPVLNKY TFEESSNGDK NKGRLFAYTV SKDLQLTKYD
     201  ITDFSKRPKK LKYAKGGAKY IPTSKHEYEN TTEGHYDEIL TVAASPDGKY
     251  VVTGGRDRKL IVWSTESLSP VKVIPTKDRR GEVLSLAFRK NSDQLYASCA
     301  DFKIRTYSIN QFSQLEILYG HHDIVEDISA LAMERCVTVG ARDRTAMLWK
     351  IPDETRLTFR GGDEPQKLLR RWMKENAKEG EDGEVKYPDE SEAPLFFCEG
     401  SIDVVSMVDD FHFITGSDNG NICLWSLAKK KPIFTERIAH GILPEPSFND
     451  ISGETDEELR KRQLQGKKLL QPFWITSLYA IPYSNVFISG SWSGSLKVWK
     501  ISDNLRSFEL LGELSGAKGV VTKIQVVESG KHGKEKFRIL ASIAKEHRLG
     551  RWIANVSGAR NGIYSAVIDQ TGF*

external links for Rrp9p
Homologs Interaction Resources Protein databases/Other Localization Resources
BLASTP (NCBI) BioGRID SCOP Superfamily Organelle DB
Ashbya (AGD) BOND GPMdb (Mass Spec.) YPL+
Candida (CGD) BioPIXIE MIPS YeastGFP
Candida (CandidaDB) CYC2008 (complexes) Pfam domains YeastRC Public Image Repository
YGOB Complexome YeastRC Structure Prediction (Seattle)
YOGY DIP


GeneMANIA

References cited on this page View Complete Literature Guide for Rrp9p
1) Venema J, et al.  (2000) Yeast Rrp9p is an evolutionarily conserved U3 snoRNP protein essential for early pre-rRNA processing cleavages and requires box C for its association. RNA 6(11):1660-71
2) Ghaemmaghami S, et al.  (2003) Global analysis of protein expression in yeast. Nature 425(6959):737-41