DIB1/YPR082C Protein Information Help

Standard Name Dib1p
Systematic Name Ypr082cp
Alias Snu16p
ORF Classification Verified
Description 17-kDa component of the U4/U6aU5 tri-snRNP, plays an essential role in pre-mRNA splicing, orthologue of hDIM1, the human U5-specific 15-kDa protein (1, 2, 3)
Name Description S. pombe DIm1+ in Budding yeast
Predicted Sequence Formatted Sequence or sequence in FASTA format
Length (a.a.) 143
Molecular Weight (Da) 16,776
Isoelectric Point (pI) 6.12

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Post-translational Modifications PhosphoGRID | PhosphoPep Database
Domains/motifs See the graphical view and list of proteins that share domains/motifs in common with Dib1p (InterPro)
Physical Interactions There are 64 total physical interactions (BioGRID)
Homologs PDB Homologs | BLASTP | BLASTP v. fungi | Fungal Alignment | Synteny Viewer
External Sequence Databases EBI: UPI00000530CF | Q06819
MIPS: YPR082C
NCBI: 1230688 | 45269998 | 6225269 | 6325339 | NP_015407.1
GenBank/EMBL/DDBJ: DAA11500.1 | AY558054 | U51033
Amino Acid Sequence (or in FASTA format)
 
       1  MASVLLPQLR TGWHVDQAIV TETKRLVVIR FGRKNDRQCM IMDELLSSIA
      51  ERVRNFAVIY LCDIDEVSDF DEMYELTDPM TVMFFYHNKH MMCDFGTGNN
     101  NKLNFIVDDK QEMIDILETI FRGARKNKGL VVSPYDYNHK RVS*

external links for Dib1p
Homologs Interaction Resources Protein databases/Other Localization Resources
BLASTP (NCBI) BioGRID SCOP Superfamily YPL+
Ashbya (AGD) BOND GPMdb (Mass Spec.) YeastGFP
Aspergillus (AspGD) BioPIXIE MIPS
Candida (CGD) CYC2008 (complexes) Pfam domains
Candida (CandidaDB) Complexome YeastRC Structure Prediction (Seattle)
YGOB DIP

YOGY GeneMANIA


YeastRC Two-Hybrid (Seattle)

References cited on this page View Complete Literature Guide for Dib1p
1) Gottschalk A, et al.  (1999) Identification by mass spectrometry and functional analysis of novel proteins of the yeast [U4/U6.U5] tri-snRNP. EMBO J 18(16):4535-48
2) Stevens SW and Abelson J  (1999) Purification of the yeast U4/U6.U5 small nuclear ribonucleoprotein particle and identification of its proteins. Proc Natl Acad Sci U S A 96(13):7226-31
3) Zhang YZ, et al.  (1999) The evolutionarily conserved Dim1 protein defines a novel branch of the thioredoxin fold superfamily. Physiol Genomics 1(3):109-18