RPL20B/YOR312C Protein Information

Standard Name	Rpl20bp
Systematic Name	Yor312cp
Alias	Rpl18a1p
ORF Classification	Verified
Description	Ribosomal 60S subunit protein L20B; homologous to mammalian ribosomal protein L18A, no bacterial homolog; RPL20B has a paralog, RPL20A, that arose from the whole genome duplication (1, 2, 3, 4)
Name Description	Ribosomal Protein of the Large subunit
Gene Product	L18B 1 , L20B 1 , L20e 4

Predicted Sequence	Formatted Sequence or sequence in FASTA format
Length (a.a.)	172
Molecular Weight (Da)	20,437
Isoelectric Point (pI)	11.12

Click on image for expanded interactive view

Post-translational Modifications	PhosphoGRID \| PhosphoPep Database
Domains/motifs	See the graphical view and list of proteins that share domains/motifs in common with Rpl20bp (InterPro)
Physical Interactions	There are 86 total physical interactions (BioGRID)
Homologs	PDB Homologs \| BLASTP \| BLASTP v. fungi \| Fungal Alignment \| Synteny Viewer
External Sequence Databases	EBI: UPI000153C038 \| P0CX24 MIPS: YOR312C NCBI: 119675174 \| 1420686 \| 154199621 \| 154200011 \| 338819289 \| 940843 \| NP_013969.3 \| NP_014957.2 GenBank/EMBL/DDBJ: DAA11077.1 \| EF138822 \| X90565 \| Z75220

Amino Acid Sequence (or in FASTA format)
1 MAHFKEYQVI GRRLPTESVP EPKLFRMRIF ASNEVIAKSR YWYFLQKLHK 51 VKKASGEIVS INQINEAHPT KVKNFGVWVR YDSRSGTHNM YKEIRDVSRV 101 AAVETLYQDM AARHRARFRS IHILKVAEIE KTADVKRQYV KQFLTKDLKF 151 PLPHRVQKST KTFSYKRPST FY*

Amino Acid Sequence (or in FASTA format)

       1  MAHFKEYQVI GRRLPTESVP EPKLFRMRIF ASNEVIAKSR YWYFLQKLHK
      51  VKKASGEIVS INQINEAHPT KVKNFGVWVR YDSRSGTHNM YKEIRDVSRV
     101  AAVETLYQDM AARHRARFRS IHILKVAEIE KTADVKRQYV KQFLTKDLKF
     151  PLPHRVQKST KTFSYKRPST FY*

external links for Rpl20bp

Homologs	Interaction Resources	Protein databases/Other	Localization Resources
BLASTP (NCBI)	BioGRID	SCOP Superfamily	YPL+
Ashbya (AGD)	BOND	GPMdb (Mass Spec.)	YeastGFP
Aspergillus (AspGD)	BioPIXIE	MIPS
Candida (CGD)	CYC2008 (complexes)	Pfam domains
Candida (CandidaDB)	Complexome	YeastRC Structure Prediction (Seattle)
YGOB	GeneMANIA
YOGY

References cited on this page View Complete Literature Guide for Rpl20bp

1)	Planta RJ and Mager WH (1998) The list of cytoplasmic ribosomal proteins of Saccharomyces cerevisiae. Yeast 14(5):471-7
2)	Lecompte O, et al. (2002) Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale. Nucleic Acids Res 30(24):5382-90
3)	Byrne KP and Wolfe KH (2005) The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res 15(10):1456-61
4)	Jenner L, et al. (2012) Crystal structure of the 80S yeast ribosome. Curr Opin Struct Biol 22(6):759-67