RPB11/YOL005C Protein Information

RPB11/YOL005C Protein Information

Standard Name	Rpb11p 1
Systematic Name	Yol005cp
ORF Classification	Verified
Description	RNA polymerase II subunit B12.5; part of central core; similar to Rpc19p and bacterial alpha subunit (2, 3, 4, 5)
Name Description	RNA Polymerase B 6
Gene Product	B12.5 7

Experimental Data
Molecules/cell	4280 8

Click on image for expanded interactive view

Post-translational Modifications	PhosphoGRID \| PhosphoPep Database
Domains/motifs	See the graphical view and list of proteins that share domains/motifs in common with Rpb11p (InterPro)
Physical Interactions	There are 129 total physical interactions (BioGRID)
Homologs	PDB Homologs \| BLASTP \| BLASTP v. fungi \| Fungal Alignment \| Synteny Viewer
External Sequence Databases	EBI: UPI0000053191 \| P38902 MIPS: YOL005C NCBI: 110590864 \| 122920069 \| 122920084 \| 122920099 \| 122921038 \| 122921074 \| 122921090 \| 122921105 \| 122921117 \| 134104684 \| 134104699 \| 134104720 \| 134104732 \| 134104744 \| 1419769 \| 14278332 \| 14278343 \| 14278373 \| 146387192 \| 160877783 \| 161172237 \| 161172250 \| 190613472 \| 194368742 \| 20150721 \| 224983600 \| 239781924 \| 239781937 \| 239781950 \| 239781963 \| 239781976 \| 239781990 \| 239782003 \| 239782016 \| 240104521 \| 254839451 \| 254839466 \| 254839481 \| 254839496 \| 254839511 \| 254839526 \| 254839541 \| 257471956 \| 257471971 \| 266618775 \| 269914560 \| 295982483 \| 295982496 \| 30749626 \| 30749747 \| 325053973 \| 325053988 \| 326634548 \| 343197464 \| 343197476 \| 343197488 \| 343197500 \| 343197512 \| 343197524 \| 343197536 \| 343197548 \| 343197560 \| 343197572 \| 343197584 \| 343781205 \| 34810563 \| 357380846 \| 359546300 \| 359546318 \| 359546335 \| 359546352 \| 359546369 \| 359546386 \| 359546402 \| 359546419 \| 374977889 \| 374977904 \| 380764989 \| 386198 \| 414145456 \| 414145469 \| 45269886 \| 459358304 \| 46015423 \| 46015788 \| 56965919 \| 56965931 \| 56966115 \| 56966129 \| 56966139 \| 56966149 \| 56966159 \| 58177174 \| 61679454 \| 61679471 \| 61679512 \| 61679525 \| 6324569 \| 730605 \| 83754253 \| NP_014638.1 GenBank/EMBL/DDBJ: DAA10778.1 \| AY557998 \| S62624 \| Z74747

Amino Acid Sequence (or in FASTA format)
1 MNAPDRFELF LLGEGESKLK IDPDTKAPNA VVITFEKEDH TLGNLIRAEL 51 LNDRKVLFAA YKVEHPFFAR FKLRIQTTEG YDPKDALKNA CNSIINKLGA 101 LKTNFETEWN LQTLAADDAF *

external links for Rpb11p

Homologs	Interaction Resources	Protein databases/Other	Localization Resources
BLASTP (NCBI)	BioGRID	SCOP Superfamily	YPL+
Ashbya (AGD)	BOND	GPMdb (Mass Spec.)	YeastGFP
Aspergillus (AspGD)	BioPIXIE	MIPS	YeastRC Public Image Repository
Candida (CGD)	CYC2008 (complexes)	Pfam domains
Candida (CandidaDB)	Complexome	YeastRC Structure Prediction (Seattle)
YGOB	DIP
YOGY	GeneMANIA
	YeastRC Mass Spec (Seattle)

References cited on this page View Complete Literature Guide for Rpb11p

1)	Woychik NA, et al. (1993) Yeast RNA polymerase II subunit RPB11 is related to a subunit shared by RNA polymerase I and III. Gene Expr 3(1):77-82
2)	Archambault J and Friesen JD (1993) Genetics of eukaryotic RNA polymerases I, II, and III. Microbiol Rev 57(3):703-24
3)	Hampsey M (1998) Molecular genetics of the RNA polymerase II general transcriptional machinery. Microbiol Mol Biol Rev 62(2):465-503
4)	Cramer P, et al. (2000) Architecture of RNA polymerase II and implications for the transcription mechanism. Science 288(5466):640-9
5)	Cramer P (2002) Multisubunit RNA polymerases. Curr Opin Struct Biol 12(1):89-97
6)	Nonet M, et al. (1987) Eucaryotic RNA polymerase conditional mutant that rapidly ceases mRNA synthesis. Mol Cell Biol 7(5):1602-11
7)	Ishihama A, et al. (1998) Subunits of yeast RNA polymerases: structure and function. Curr Opin Microbiol 1(2):190-6
8)	Ghaemmaghami S, et al. (2003) Global analysis of protein expression in yeast. Nature 425(6959):737-41