RPL13B/YMR142C Protein Information

Standard Name	Rpl13bp
Systematic Name	Ymr142cp
ORF Classification	Verified
Description	Ribosomal 60S subunit protein L13B; not essential for viability; homologous to mammalian ribosomal protein L13, no bacterial homolog; RPL13B has a paralog, RPL13A, that arose from the whole genome duplication (1, 2, 3, 4)
Name Description	Ribosomal Protein of the Large subunit
Gene Product	L13B 1 , L13e 4

Experimental Data
Molecules/cell	54200 5

Predicted Sequence	Formatted Sequence or sequence in FASTA format
Length (a.a.)	199
Molecular Weight (Da)	22,525
Isoelectric Point (pI)	11.71

Click on image for expanded interactive view

Post-translational Modifications	PhosphoGRID \| PhosphoPep Database
Domains/motifs	See the graphical view and list of proteins that share domains/motifs in common with Rpl13bp (InterPro)
Physical Interactions	There are 90 total physical interactions (BioGRID)
Homologs	PDB Homologs \| BLASTP \| BLASTP v. fungi \| Fungal Alignment \| Synteny Viewer
External Sequence Databases	EBI: UPI0000132EDE \| P40212 MIPS: YMR142C NCBI: 606440 \| 6323791 \| 730531 \| NP_013862.1 GenBank/EMBL/DDBJ: DAA10038.1 \| Z47071

Amino Acid Sequence (or in FASTA format)
1 MAISKNLPIL KNHFRKHWQE RVKVHFDQAG KKVSRRNARA ARAAKIAPRP 51 LDLLRPVVRA PTVKYNRKVR AGRGFTLAEV KAAGLTAAYA RTIGIAVDHR 101 RQNRNQEIFD ANVQRLKEYQ SKIIVFPRDG KAPEAEQVLS AAATFPIAQP 151 ATDVEARAVQ DNGESAFRTL RLARSEKKFR GIREKRAREK AEAEAEKKK*

Amino Acid Sequence (or in FASTA format)

       1  MAISKNLPIL KNHFRKHWQE RVKVHFDQAG KKVSRRNARA ARAAKIAPRP
      51  LDLLRPVVRA PTVKYNRKVR AGRGFTLAEV KAAGLTAAYA RTIGIAVDHR
     101  RQNRNQEIFD ANVQRLKEYQ SKIIVFPRDG KAPEAEQVLS AAATFPIAQP
     151  ATDVEARAVQ DNGESAFRTL RLARSEKKFR GIREKRAREK AEAEAEKKK*

external links for Rpl13bp

Homologs	Interaction Resources	Protein databases/Other	Localization Resources
BLASTP (NCBI)	BioGRID	SCOP Superfamily	YPL+
Ashbya (AGD)	BOND	GPMdb (Mass Spec.)	YeastGFP
YGOB	BioPIXIE	MIPS	YeastRC Public Image Repository
YOGY	CYC2008 (complexes)	Pfam domains
	Complexome	YeastRC Structure Prediction (Seattle)
	DIP
	GeneMANIA

References cited on this page View Complete Literature Guide for Rpl13bp

1)	Planta RJ and Mager WH (1998) The list of cytoplasmic ribosomal proteins of Saccharomyces cerevisiae. Yeast 14(5):471-7
2)	Lecompte O, et al. (2002) Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale. Nucleic Acids Res 30(24):5382-90
3)	Byrne KP and Wolfe KH (2005) The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res 15(10):1456-61
4)	Jenner L, et al. (2012) Crystal structure of the 80S yeast ribosome. Curr Opin Struct Biol 22(6):759-67
5)	Ghaemmaghami S, et al. (2003) Global analysis of protein expression in yeast. Nature 425(6959):737-41