VBA1/YMR088C Protein Information

Standard Name	Vba1p 1
Systematic Name	Ymr088cp
ORF Classification	Verified
Description	Permease of basic amino acids in the vacuolar membrane (1)
Name Description	Vacuolar Basic Amino acid transporter 1

Predicted Sequence	Formatted Sequence or sequence in FASTA format
Length (a.a.)	562
Molecular Weight (Da)	62,639
Isoelectric Point (pI)	9.23

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Post-translational Modifications	PhosphoGRID \| PhosphoPep Database
Domains/motifs	See the graphical view and list of proteins that share domains/motifs in common with Vba1p (InterPro)
Transmembrane Domains	There are 12 total predicted transmembrane domains (TMHMM)
Physical Interactions	There are 3 total physical interactions (BioGRID)
Homologs	PDB Homologs \| BLASTP \| BLASTP v. fungi \| Fungal Alignment \| Synteny Viewer
External Sequence Databases	EBI: UPI000013BA45 \| Q04301 MIPS: YMR088C NCBI: 2501164 \| 6323735 \| 807971 \| NP_013806.1 GenBank/EMBL/DDBJ: DAA09985.1 \| Z49259

Amino Acid Sequence (or in FASTA format)
1 MQTLDETSNL LPPPEEAEAP PLEQKFHEYN LALPKFPILF SLWLGSFLSS 51 LDSTIVANIM NRVAEEFSES SKKQWIATSF LLTNTAFQPL YGKLSDITGR 101 KSALLTAQFF FGLGCLLTCF ARNVTEFSIA RAICGIGAGG LNAISSIAVS 151 DICTARERGV YQGYANIVFG FGQLLGAPLG GVFIETIGWR ALFGIQVPVI 201 MLCSVLAIKN INIKLFHVPP MKERYTLKNL SRIDIFGSLS LVATISGVLF 251 LCSSQLNKLY LALFTIGSFI VFILVERYYA TEKILPFELL TRSFCLSSAV 301 TVISSFVVFG EIFRSPIYLQ LLQNISVTKT GLFLIFPSIS VAVGSLVTGW 351 VLRNTKINLA HCAYQIIFGG MIMQLLGLGL GYFLLSHLNP DYTIYDMLES 401 ITFRSNSIWW KLIYVFASVL VSFGYACLLV ATLVSIVFTV EKSQQGTMTG 451 VFYLWRSIGN VLGASLTLVS YENSLSSMLW NYMFKTKRDD EYHFTKKQYY 501 SLINDSSYLR GPNFPTDIFV RILDVYKKAF LISYIPNIAL AAVGIVLSLY 551 LVKHTYKRSS SS*

Amino Acid Sequence (or in FASTA format)

       1  MQTLDETSNL LPPPEEAEAP PLEQKFHEYN LALPKFPILF SLWLGSFLSS
      51  LDSTIVANIM NRVAEEFSES SKKQWIATSF LLTNTAFQPL YGKLSDITGR
     101  KSALLTAQFF FGLGCLLTCF ARNVTEFSIA RAICGIGAGG LNAISSIAVS
     151  DICTARERGV YQGYANIVFG FGQLLGAPLG GVFIETIGWR ALFGIQVPVI
     201  MLCSVLAIKN INIKLFHVPP MKERYTLKNL SRIDIFGSLS LVATISGVLF
     251  LCSSQLNKLY LALFTIGSFI VFILVERYYA TEKILPFELL TRSFCLSSAV
     301  TVISSFVVFG EIFRSPIYLQ LLQNISVTKT GLFLIFPSIS VAVGSLVTGW
     351  VLRNTKINLA HCAYQIIFGG MIMQLLGLGL GYFLLSHLNP DYTIYDMLES
     401  ITFRSNSIWW KLIYVFASVL VSFGYACLLV ATLVSIVFTV EKSQQGTMTG
     451  VFYLWRSIGN VLGASLTLVS YENSLSSMLW NYMFKTKRDD EYHFTKKQYY
     501  SLINDSSYLR GPNFPTDIFV RILDVYKKAF LISYIPNIAL AAVGIVLSLY
     551  LVKHTYKRSS SS*

external links for Vba1p

Homologs	Interaction Resources	Protein databases/Other	Localization Resources
BLASTP (NCBI)	BioGRID	SCOP Superfamily	YPL+
Ashbya (AGD)	BOND	GPMdb (Mass Spec.)	YeastGFP
YGOB	BioPIXIE	MIPS
YOGY	CYC2008 (complexes)	Pfam domains
	Complexome	YeastRC Structure Prediction (Seattle)
	DIP
	GeneMANIA
	YeastRC Two-Hybrid (Seattle)

References cited on this page View Complete Literature Guide for Vba1p

1)	Shimazu M, et al. (2005) A family of basic amino acid transporters of the vacuolar membrane from Saccharomyces cerevisiae. J Biol Chem 280(6):4851-7