YMR046C Protein Information

Systematic Name	Ymr046cp
Description	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag (1, 2)

Predicted Sequence	Formatted Sequence or sequence in FASTA format
Length (a.a.)	440
Molecular Weight (Da)	49,274
Isoelectric Point (pI)	7.9

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Post-translational Modifications	PhosphoGRID
Domains/motifs	See the graphical view and list of proteins that share domains/motifs in common with Ymr046cp (InterPro)
Physical Interactions	There are 7 total physical interactions (BioGRID)
Homologs	PDB Homologs \| BLASTP \| BLASTP v. fungi \| Fungal Alignment \| Synteny Viewer
External Sequence Databases	EBI: UPI000013BA23 \| Q04215 NCBI: 2497234 \| 6323689 \| 695726 \| NP_013760.1 GenBank/EMBL/DDBJ: DAA09945.1 \| Z48502

Amino Acid Sequence (or in FASTA format)
1 MESQQLSQHS PISHGSACAS VTSKEVQTTQ DPLDISASKT EECEKVSTQA 51 NSQQPTTPLS SAVPENHHHA SPQAAQVPLP QNGPYPQQRM MNTQQANISG 101 WPVYGHPSLM PYPPYQMSPM YAPPGAQSQF TQYPQYVGTH LNTPSPESGN 151 SFPDSSSAKS NMTSTNQHVR PPPILTSPND FLNWVKIYIK FLQNSNLGDI 201 IPTATRKAVR QMTDDELTFL CHTFQLFAPS QFLPPWVKDI LSVDYTDIMK 251 ILSKSINKMQ SDTQEVNDIT TLATLHYNGS TPADAFEAEV TNILDRLNNN 301 GIPINNKVAC QFIMRGLSGE YKFLRYARHR CIHMTVADLF SDIHSMYEEQ 351 QESKRNKSTH RRSPSDEKKD SRTYTNTTKP KSITRNSQKP NNSQSRTARA 401 HNVSTFNNSP GPDNDLIRGS TTEPIQLKNT HDLHLRPGTY *

Amino Acid Sequence (or in FASTA format)

       1  MESQQLSQHS PISHGSACAS VTSKEVQTTQ DPLDISASKT EECEKVSTQA
      51  NSQQPTTPLS SAVPENHHHA SPQAAQVPLP QNGPYPQQRM MNTQQANISG
     101  WPVYGHPSLM PYPPYQMSPM YAPPGAQSQF TQYPQYVGTH LNTPSPESGN
     151  SFPDSSSAKS NMTSTNQHVR PPPILTSPND FLNWVKIYIK FLQNSNLGDI
     201  IPTATRKAVR QMTDDELTFL CHTFQLFAPS QFLPPWVKDI LSVDYTDIMK
     251  ILSKSINKMQ SDTQEVNDIT TLATLHYNGS TPADAFEAEV TNILDRLNNN
     301  GIPINNKVAC QFIMRGLSGE YKFLRYARHR CIHMTVADLF SDIHSMYEEQ
     351  QESKRNKSTH RRSPSDEKKD SRTYTNTTKP KSITRNSQKP NNSQSRTARA
     401  HNVSTFNNSP GPDNDLIRGS TTEPIQLKNT HDLHLRPGTY *

external links for Ymr046cp

Homologs	Interaction Resources	Protein databases/Other	Localization Resources
BLASTP (NCBI)	BioGRID	SCOP Superfamily	YeastGFP
Pfam domains

References cited on this page View Complete Literature Guide for Ymr046cp

1)	Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78
2)	Lesage P and Todeschini AL (2005) Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet Genome Res 110(1-4):70-90