TAF13/YML098W Protein Information Help

Standard Name Taf13p 1
Systematic Name Yml098wp
Alias Fun81p 2 , Taf19p 3
ORF Classification Verified
Description TFIID subunit (19 kDa), involved in RNA polymerase II transcription initiation, similar to histone H4 with atypical histone fold motif of Spt3-like transcription factors (1, 4)
Name Description TATA binding protein-Associated Factor
Gene Product TafII19
Experimental Data
Molecules/cell 2080 5
Predicted Sequence Formatted Sequence or sequence in FASTA format
Length (a.a.) 167
Molecular Weight (Da) 19,132
Isoelectric Point (pI) 5.57

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Post-translational Modifications PhosphoGRID | PhosphoPep Database
Domains/motifs See the graphical view and list of proteins that share domains/motifs in common with Taf13p (InterPro)
Physical Interactions There are 116 total physical interactions (BioGRID)
Homologs PDB Homologs | BLASTP | BLASTP v. fungi | Fungal Alignment | Synteny Viewer
External Sequence Databases EBI: UPI000005320D | P11747
MIPS: YML098W
NCBI: 1346053 | 171527 | 45269417 | 575704 | 6323540 | NP_013611.1
GenBank/EMBL/DDBJ: DAA09801.1 | AY557763 | M17512 | Z46660
Amino Acid Sequence (or in FASTA format)
 
       1  MSRKLKKTNL FNKDVSSLLY AYGDVPQPLQ ATVQCLDELV SGYLVDVCTN
      51  AFHTAQNSQR NKLRLEDFKF ALRKDPIKLG RAEELIATNK LITEAKKQFN
     101  ETDNQNSLKR YREEDEEGDE MEEDEDEQQV TDDDEEAAGR NSAKQSTDSK
     151  ATKIRKQGPK NLKKTKK*

external links for Taf13p
Homologs Interaction Resources Protein databases/Other Localization Resources
BLASTP (NCBI) BioGRID SCOP Superfamily Organelle DB
Ashbya (AGD) BOND GPMdb (Mass Spec.) YPL+
Aspergillus (AspGD) BioPIXIE MIPS YeastGFP
Candida (CGD) CYC2008 (complexes) Pfam domains YeastRC Public Image Repository
Candida (CandidaDB) Complexome YeastRC Structure Prediction (Seattle)
YGOB DIP

YOGY GeneMANIA

References cited on this page View Complete Literature Guide for Taf13p
1) Tora L  (2002) A unified nomenclature for TATA box binding protein (TBP)-associated factors (TAFs) involved in RNA polymerase II transcription. Genes Dev 16(6):673-5
2) Dubois E, et al.  (1987) Characterization of two new genes essential for vegetative growth in Saccharomyces cerevisiae: nucleotide sequence determination and chromosome mapping. Gene 55(2-3):265-75
3) Moqtaderi Z, et al.  (1996) Yeast homologues of higher eukaryotic TFIID subunits. Proc Natl Acad Sci U S A 93(25):14654-8
4) Lee TI and Young RA  (2000) Transcription of eukaryotic protein-coding genes. Annu Rev Genet 34:77-137
5) Ghaemmaghami S, et al.  (2003) Global analysis of protein expression in yeast. Nature 425(6959):737-41