RPS25B/YLR333C Protein Information Help

Standard Name Rps25bp
Systematic Name Ylr333cp
ORF Classification Verified
Description Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S25, no bacterial homolog; RPS25B has a paralog, RPS25A, that arose from the whole genome duplication (1, 2, 3, 4)
Name Description Ribosomal Protein of the Small subunit
Gene Product S25B 1 , S25e 4 , S31B 1 , YS23 1 , rp45 1
Experimental Data
Molecules/cell 162000 5
Predicted Sequence Formatted Sequence or sequence in FASTA format
Length (a.a.) 108
Molecular Weight (Da) 12,009
Isoelectric Point (pI) 11.13

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Post-translational Modifications PhosphoGRID | PhosphoPep Database
Domains/motifs See the graphical view and list of proteins that share domains/motifs in common with Rps25bp (InterPro)
Physical Interactions There are 20 total physical interactions (BioGRID)
Homologs PDB Homologs | BLASTP | BLASTP v. fungi | Fungal Alignment | Synteny Viewer
External Sequence Databases EBI: UPI0000134EB6 | P0C0T4
MIPS: YLR333C
NCBI: 124263194 | 51013743 | 609389 | 6323365 | 83288131 | NP_013437.1 | NM_001182222.1
GenBank/EMBL/DDBJ: DAA09640.1 | AY693146 | EF123130 | U19028
Amino Acid Sequence (or in FASTA format)
 
       1  MPPKQQLSKA AKAAAALAGG KKSKKKWSKK SMKDRAQHAV ILDQEKYDRI
      51  LKEVPTYRYV SVSVLVDRLK IGGSLARIAL RHLEKEGIIK PISKHSKQAI
     101  YTRAAASE*

external links for Rps25bp
Homologs Interaction Resources Protein databases/Other Localization Resources
BLASTP (NCBI) BioGRID SCOP Superfamily YPL+
Ashbya (AGD) BOND GPMdb (Mass Spec.) YeastGFP
Aspergillus (AspGD) BioPIXIE MIPS YeastRC Public Image Repository
Candida (CGD) CYC2008 (complexes) Pfam domains
Candida (CandidaDB) Complexome YeastRC Structure Prediction (Seattle)
YGOB DIP

YOGY GeneMANIA

References cited on this page View Complete Literature Guide for Rps25bp
1) Planta RJ and Mager WH  (1998) The list of cytoplasmic ribosomal proteins of Saccharomyces cerevisiae. Yeast 14(5):471-7
2) Lecompte O, et al.  (2002) Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale. Nucleic Acids Res 30(24):5382-90
3) Byrne KP and Wolfe KH  (2005) The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res 15(10):1456-61
4) Jenner L, et al.  (2012) Crystal structure of the 80S yeast ribosome. Curr Opin Struct Biol 22(6):759-67
5) Ghaemmaghami S, et al.  (2003) Global analysis of protein expression in yeast. Nature 425(6959):737-41