YLR040C Protein Information

Systematic Name	Ylr040cp
ORF Classification	Uncharacterized
Description	Protein of unknown function; localizes to the cell wall; predicted to be a GPI-attached protein; upregulated by Mcm1p-Alpha1p transcription factor; partially overlaps the dubious ORF YLR041W; mRNA identified as translated by ribosome profiling data; YLR040C is not essential (1, 2, 3, 4)

Predicted Sequence	Formatted Sequence or sequence in FASTA format
Length (a.a.)	224
Molecular Weight (Da)	24,462
Isoelectric Point (pI)	4.64

Click on image for expanded interactive view

Post-translational Modifications	PhosphoGRID \| PhosphoPep Database
Domains/motifs	See the graphical view and list of proteins that share domains/motifs in common with Ylr040cp (InterPro)
Signal Peptide(s)	There are 1 total predicted predicted signal peptide(s) (SignalP)
Physical Interactions	There are 2 total physical interactions (BioGRID)
Homologs	PDB Homologs \| BLASTP \| BLASTP v. fungi \| Fungal Alignment \| Synteny Viewer
External Sequence Databases	EBI: UPI0000036C6E \| Q07988 MIPS: YLR040C NCBI: 1360368 \| 45269768 \| 6323070 \| 74676454 \| NP_013141.1 GenBank/EMBL/DDBJ: DAA09359.1 \| AY557938 \| Z73212

Amino Acid Sequence (or in FASTA format)
1 MIFAPSFSLI KNILLVSFLI SHSFAAKTLT SSSNDDTLAR SAAADADMAF 51 FMEFLNDFDT AFPQYTSYMM QNHLTLPQPV ADYYYHMVDL ASTADLQSDI 101 AQSFPFTQFQ TFITAFPWYT SLLNKASATT IYLPQHFITG ETEATMTNSS 151 YASQKNSVSN SVPFSTANAG QSMISMANEE NSTTALISAS NSSSTSRTSQ 201 SQNGAHAKSL YFPMALFGIF AVAL*

Amino Acid Sequence (or in FASTA format)

       1  MIFAPSFSLI KNILLVSFLI SHSFAAKTLT SSSNDDTLAR SAAADADMAF
      51  FMEFLNDFDT AFPQYTSYMM QNHLTLPQPV ADYYYHMVDL ASTADLQSDI
     101  AQSFPFTQFQ TFITAFPWYT SLLNKASATT IYLPQHFITG ETEATMTNSS
     151  YASQKNSVSN SVPFSTANAG QSMISMANEE NSTTALISAS NSSSTSRTSQ
     201  SQNGAHAKSL YFPMALFGIF AVAL*

external links for Ylr040cp

Homologs	Interaction Resources	Protein databases/Other	Localization Resources
BLASTP (NCBI)	BioGRID	SCOP Superfamily	Organelle DB
Ashbya (AGD)	BOND	GPMdb (Mass Spec.)	YPL+
YGOB	BioPIXIE	MIPS	YeastGFP
YOGY	CYC2008 (complexes)	Pfam domains
	Complexome
	DIP
	GeneMANIA

References cited on this page View Complete Literature Guide for Ylr040cp

1)	Hamada K, et al. (1999) Amino acid residues in the omega-minus region participate in cellular localization of yeast glycosylphosphatidylinositol-attached proteins. J Bacteriol 181(13):3886-9
2)	Giaever G, et al. (2002) Functional profiling of the Saccharomyces cerevisiae genome. Nature 418(6896):387-91
3)	Galgoczy DJ, et al. (2004) Genomic dissection of the cell-type-specification circuit in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 101(52):18069-74
4)	Brar GA, et al. (2012) High-resolution view of the yeast meiotic program revealed by ribosome profiling. Science 335(6068):552-7