YJL113W Protein Information

Systematic Name	Yjl113wp
Description	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes (1, 2, 3)

Predicted Sequence	Formatted Sequence or sequence in FASTA format
Length (a.a.)	1,803
Molecular Weight (Da)	207,708
Isoelectric Point (pI)	8.05

Click on image for expanded interactive view

Post-translational Modifications	PhosphoGRID
Domains/motifs	See the graphical view and list of proteins that share domains/motifs in common with Yjl113wp (InterPro)
Physical Interactions	There are 21 total physical interactions (BioGRID)
Homologs	PDB Homologs \| BLASTP \| BLASTP v. fungi \| Fungal Alignment \| Synteny Viewer
External Sequence Databases	EBI: UPI000016835F \| P47024 NCBI: 2131086 \| 311033526 \| 330443635 \| 6686355 \| NP_012421.2 GenBank/EMBL/DDBJ: DAA08686.2 \| X67284 \| Z49389
External Classifications	EC: 2.7.7.49 [RNA-directed DNA polymerase] EC: 2.7.7.7 [DNA-directed DNA polymerase] EC: 3.1.26.4 [Ribonuclease H] EC: 3.4.23.- [Aspartic Endopeptidases]

Amino Acid Sequence (or in FASTA format)
1 MNKLQKLVLM EKWIFSKCCQ DCPNLKDYLQ EAIMGTLHES LRNSVKQRLY 51 NIPHDVGIDH EEFLINTVIE TVIDLSPIAD DQIENSCMYC KSVFHCSINC 101 KKKPNRELGL TRPISQKPII YKVHRDNNHL SPVQNEQKSW NKTQKRSNKV 151 YNSKKLVIID TGSGVNITND KTLLHNYEDS NRSTRFFGIG KNSSVSVKGY 201 GYIKIKNGHN NTDNKCLLTY YVPEEESTII SCYDLAKKTK MVLSRKYTRL 251 GNKIIKIKTK IVNGVIHVKM NELIERPSDD SKINAIKPTS SPGFKLNKRS 301 ITLEDAHKRM GHTGIQQIEN SIKHNHYEES LDLIKEPNEF WCQTCKISKA 351 TKRNHYTGSM NNHSTDHEPG SSWCMDIFGP VSSSNADTKR YMLIMVDNNT 401 RYCMTSTHFN KNAETILAQV RKNIQYVETQ FDRKVREINS DRGTEFTNDQ 451 IEEYFISKGI HHILTSTQDH AANGRAERYI RTIITDATTL LRQSNLRVKF 501 WEYAVTSATN IRNYLEHKST GKLPLKAISR QPVTVRLMSF LPFGEKGIIW 551 NHNHKKLKPS GLPSIILCKD PNSYGYKFFI PSKNKIVTSD NYTIPNYTMD 601 GRVRNTQNIN KSHQFSSDND DEEDQIETVT NLCEALENYE DDNKPITRLE 651 DLFTEEELSQ IDSNAKYPSP SNNLEGDLDY VFSDVEESGD YDVESELSTT 701 NNSISTDKNK ILSNKDFNSE LASTEISISG IDKKGLINTS HIDEDKYDEK 751 VHRIPSIIQE KLVGSKNTIK INDENKISDR IRSKNIGSIL NTGLSRCVDI 801 TDESITNKDE SMHNAKPELI QEQLKKTNHE TSFPKEGSIG TNVKFRNTNN 851 EISLKTGDTS LPIKTLESIN NHHSNDYSTN KVEKFEKENH HPPPIEDIVD 901 MSDQTDMESN CQDGNNLKEL KVTDKNVPTD NGTNVSPRLE QNIEASGSPV 951 QTVNKSAFLN KEFSSLNMKR KRKRHDKNNS LTSYELERDK KRSKKNRVKL 1001 IPDNMETVSA PKIRAIYYNE AISKNPDLKE KHEYKQAYHK ELQNLKDMKV 1051 FDVDVKYSRS EIPDNLIVPT NTIFTKKRNG IYKARIVCRG DTQSPDTYSV 1101 ITTESLNHNH IKIFLMIANN RNMFMKTLDI NHAFLYAKLE EEIYIPHPHD 1151 RRCVVKLNKA LYGLKQSPKE WNDHLRQYLN GIGLKDNSYT PGLYQTEDKN 1201 LMIAVYVDDC VIAASNEQRL DEFINKLKSN FELKITGTLI DDVLDTDILG 1251 MDLVYNKRLG TIDLTLKSFI NRMDKKYNEE LKKIRKSSIP HMSTYKIDPK 1301 KDVLQMSEEE FRQGVLKLQQ LLGELNYVRH KCRYDIEFAV KKVARLVNYP 1351 HERVFYMIYK IIQYLVRYKD IGIHYDRDCN KDKKVIAITD ASVGSEYDAQ 1401 SRIGVILWYG MNIFNVYSNK STNRCVSSTE AELHAIYEGY ADSETLKVTL 1451 KELGEGDNND IVMITDSKPA IQGLNRSYQQ PKEKFTWIKT EIIKEKIKEK 1501 SIKLLKITGK GNIADLLTKP VSASDFKRFI QVLKNKITSQ DILASTDY*

Amino Acid Sequence (or in FASTA format)

       1  MNKLQKLVLM EKWIFSKCCQ DCPNLKDYLQ EAIMGTLHES LRNSVKQRLY
      51  NIPHDVGIDH EEFLINTVIE TVIDLSPIAD DQIENSCMYC KSVFHCSINC
     101  KKKPNRELGL TRPISQKPII YKVHRDNNHL SPVQNEQKSW NKTQKRSNKV
     151  YNSKKLVIID TGSGVNITND KTLLHNYEDS NRSTRFFGIG KNSSVSVKGY
     201  GYIKIKNGHN NTDNKCLLTY YVPEEESTII SCYDLAKKTK MVLSRKYTRL
     251  GNKIIKIKTK IVNGVIHVKM NELIERPSDD SKINAIKPTS SPGFKLNKRS
     301  ITLEDAHKRM GHTGIQQIEN SIKHNHYEES LDLIKEPNEF WCQTCKISKA
     351  TKRNHYTGSM NNHSTDHEPG SSWCMDIFGP VSSSNADTKR YMLIMVDNNT
     401  RYCMTSTHFN KNAETILAQV RKNIQYVETQ FDRKVREINS DRGTEFTNDQ
     451  IEEYFISKGI HHILTSTQDH AANGRAERYI RTIITDATTL LRQSNLRVKF
     501  WEYAVTSATN IRNYLEHKST GKLPLKAISR QPVTVRLMSF LPFGEKGIIW
     551  NHNHKKLKPS GLPSIILCKD PNSYGYKFFI PSKNKIVTSD NYTIPNYTMD
     601  GRVRNTQNIN KSHQFSSDND DEEDQIETVT NLCEALENYE DDNKPITRLE
     651  DLFTEEELSQ IDSNAKYPSP SNNLEGDLDY VFSDVEESGD YDVESELSTT
     701  NNSISTDKNK ILSNKDFNSE LASTEISISG IDKKGLINTS HIDEDKYDEK
     751  VHRIPSIIQE KLVGSKNTIK INDENKISDR IRSKNIGSIL NTGLSRCVDI
     801  TDESITNKDE SMHNAKPELI QEQLKKTNHE TSFPKEGSIG TNVKFRNTNN
     851  EISLKTGDTS LPIKTLESIN NHHSNDYSTN KVEKFEKENH HPPPIEDIVD
     901  MSDQTDMESN CQDGNNLKEL KVTDKNVPTD NGTNVSPRLE QNIEASGSPV
     951  QTVNKSAFLN KEFSSLNMKR KRKRHDKNNS LTSYELERDK KRSKKNRVKL
    1001  IPDNMETVSA PKIRAIYYNE AISKNPDLKE KHEYKQAYHK ELQNLKDMKV
    1051  FDVDVKYSRS EIPDNLIVPT NTIFTKKRNG IYKARIVCRG DTQSPDTYSV
    1101  ITTESLNHNH IKIFLMIANN RNMFMKTLDI NHAFLYAKLE EEIYIPHPHD
    1151  RRCVVKLNKA LYGLKQSPKE WNDHLRQYLN GIGLKDNSYT PGLYQTEDKN
    1201  LMIAVYVDDC VIAASNEQRL DEFINKLKSN FELKITGTLI DDVLDTDILG
    1251  MDLVYNKRLG TIDLTLKSFI NRMDKKYNEE LKKIRKSSIP HMSTYKIDPK
    1301  KDVLQMSEEE FRQGVLKLQQ LLGELNYVRH KCRYDIEFAV KKVARLVNYP
    1351  HERVFYMIYK IIQYLVRYKD IGIHYDRDCN KDKKVIAITD ASVGSEYDAQ
    1401  SRIGVILWYG MNIFNVYSNK STNRCVSSTE AELHAIYEGY ADSETLKVTL
    1451  KELGEGDNND IVMITDSKPA IQGLNRSYQQ PKEKFTWIKT EIIKEKIKEK
    1501  SIKLLKITGK GNIADLLTKP VSASDFKRFI QVLKNKITSQ DILASTDY*

external links for Yjl113wp

Homologs	Interaction Resources	Protein databases/Other	Localization Resources
BLASTP (NCBI)	BioGRID	SCOP Superfamily	YeastGFP
Candida (CGD)	Pfam domains

References cited on this page View Complete Literature Guide for Yjl113wp

1)	Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78
2)	Lesage P and Todeschini AL (2005) Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet Genome Res 110(1-4):70-90
3)	Stucka R, et al. (1992) Molecular analysis of the yeast Ty4 element: homology with Ty1, copia, and plant retrotransposons. Gene 122(1):119-28