YHR214C-B Protein Information

Systematic Name	Yhr214c-bp
Description	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes (1, 2)

Predicted Sequence	Formatted Sequence or sequence in FASTA format
Length (a.a.)	1,793
Molecular Weight (Da)	202,816
Isoelectric Point (pI)	8.5

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Post-translational Modifications	PhosphoGRID
Domains/motifs	See the graphical view and list of proteins that share domains/motifs in common with Yhr214c-bp (InterPro)
Physical Interactions	There are 5 total physical interactions (BioGRID)
Homologs	PDB Homologs \| BLASTP \| BLASTP v. fungi \| Fungal Alignment \| Synteny Viewer
External Sequence Databases	EBI: UPI000006A50A \| O13535 NCBI: 2358007 \| 6322010 \| 74644714 \| NP_012086.1 GenBank/EMBL/DDBJ: DAA06910.1 \| U00029
External Classifications	EC: 2.7.7.49 [RNA-directed DNA polymerase] EC: 2.7.7.7 [DNA-directed DNA polymerase] EC: 3.1.26.4 [Ribonuclease H] EC: 3.4.23.- [Aspartic Endopeptidases]

Amino Acid Sequence (or in FASTA format)
1 MESQQLSNYP HISHGSACAS VTSKEVHTNQ DPLDVSASKI QEYDKASTKA 51 NSQQTTTPAS SAVPENLHHA SPQPASVPPP QNGPYPQQCM MTQNQANPSG 101 WSFYGHPSMI PYTPYQMSPM YFPPGPQSQF PQYPSSVGTP LSTPSPESGN 151 TFTDSSSADS DMTSTKKYVR PPPMLTSPND FPNWVKTYIK FLQNSNLGGI 201 IPTVNGKPVP PMLTSPNDFP NWVKTYIKFL QNSNLGGIIP TVNGKPVRQI 251 TDDELTFLYN TFQIFAPSQF LPTWVKDILS VDYTDIMKIL SKSIEKMQSD 301 TQEANDIVTL ANLQYNGSTP ADAFETKVTN IIDRLNNNGI HINNKVACQL 351 IMRGLSGEYK FLRYTRHRHL NMTVAELFLD IHAIYEEQQG SRNSKPNYRR 401 NPSDEKNDSR SYTNTTKPKV IARNPQKTNN SKSKTARAHN VSTSNNSPST 451 DNDSISKSTT EPIQLNNKHD LHLGQKLTES TVNHTNHSDD ELPGHLLLDS 501 GASRTLIRSA HHIHSASSNP DINVVDAQKR NIPINAIGDL QFHFQDNTKT 551 SIKVLHTPNI AYDLLSLNEL AAVDITACFT KNVLERSDGT VLAPIVKYGD 601 FYWVSKKYLL PSNISVPTIN NVHTSESTRK YPYPFIHRML AHANAQTIRY 651 SLKNNTITYF NESDVDWSSA IDYQCPDCLI GKSTKHRHIK GSRLKYQNSY 701 EPFQYLHTDI FGPVHNLPKS APSYFISFTD ETTKFRWVYP LHDRREDSIL 751 DVFTTILAFI KNQFQASVLV IQMDRGSEYT NRTLHKFLEK NGITPCYTTT 801 ADSRAHGVAE RLNRTLLDDC RTQLQCSGLP NHLWFSAIEF STIVRNSLAS 851 PKSKKSARQH AGLAGLDIST LLPFGQPVIV NDHNPNSKIH PRGIPGYALH 901 PSRNSYGYII YLPSLKKTVD TTNYVILQGK ESRLDQFNYD ALTFDEDLNR 951 LTASYHSFIA SNEIQQSNDL NIESDHDFQS DIELHPEQLR NVLSKAVSPT 1001 DSTPPSTHTE DSKRVSKTNI RAPREVDPNI SESNILPSKK RSSTPQISDI 1051 ESTGSGGMHR LDVPLLAPMS QSNTHESSHA SKSKDFRHSD SYSDNETNHT 1101 NVPISSTGGT NNKTVPQTSE QETEKRIIHR SPSIDTSSSE SNSLHHVVPI 1151 KTSDTCPKEN TEESIIADLP LPDLPPEPPT ELSDSFKELP PINSHQTNSS 1201 LGGIGDSNAY TTINSKKRSL EDNETEIKVS RDTWNTKNMR SLEPPRSKKR 1251 IHLIAAVKAV KSIKPIRTTL RYDEAITYNK DIKEKEKYIQ AYHKEVNQLL 1301 MMKTWDTDRY YDRKEIDPKR VINSMFIFNR KRDGTHKARF VARGDIQHPD 1351 TYDPGMQSNT VHHYALMTSL SLALDNNYYI TQLDISSAYL YADIKEELYI 1401 RPPPHLGMND KLIRLKKSLY GLKQSGANWY ETIKSYLIKQ CGMEEVRGWS 1451 CVFKNSQVTI CLFVDDMILF SKDLNANKKI ITTLKKQYDT KIINLGESDN 1501 EIQYDILGLE IKYQRGKYMK LGMENSLTEK IPKLNVPLNP KGRKLSAPGQ 1551 PGLYIDQDEL EIDEDEYKEK VHEMQKLIGL ASYVGYKFRF DLLYYINTLA 1601 QHILFPSRQV LDMTYELIQF MWDTRDKQLI WHKNKPTEPD NKLVAISDAS 1651 YGNQPYYKSQ IGNIYLLNGK VIGGKSTKAS LTCTSTTEAE IHAISESVPL 1701 LNNLSHLVQE LNKKPITKGL LTDSKSTISI IISNNEEKFR NRFFGTKAMR 1751 LRDEVSGNHL HVCYIETKKN IADVMTKPLP IKTFKLLTNK WIH*

Amino Acid Sequence (or in FASTA format)

       1  MESQQLSNYP HISHGSACAS VTSKEVHTNQ DPLDVSASKI QEYDKASTKA
      51  NSQQTTTPAS SAVPENLHHA SPQPASVPPP QNGPYPQQCM MTQNQANPSG
     101  WSFYGHPSMI PYTPYQMSPM YFPPGPQSQF PQYPSSVGTP LSTPSPESGN
     151  TFTDSSSADS DMTSTKKYVR PPPMLTSPND FPNWVKTYIK FLQNSNLGGI
     201  IPTVNGKPVP PMLTSPNDFP NWVKTYIKFL QNSNLGGIIP TVNGKPVRQI
     251  TDDELTFLYN TFQIFAPSQF LPTWVKDILS VDYTDIMKIL SKSIEKMQSD
     301  TQEANDIVTL ANLQYNGSTP ADAFETKVTN IIDRLNNNGI HINNKVACQL
     351  IMRGLSGEYK FLRYTRHRHL NMTVAELFLD IHAIYEEQQG SRNSKPNYRR
     401  NPSDEKNDSR SYTNTTKPKV IARNPQKTNN SKSKTARAHN VSTSNNSPST
     451  DNDSISKSTT EPIQLNNKHD LHLGQKLTES TVNHTNHSDD ELPGHLLLDS
     501  GASRTLIRSA HHIHSASSNP DINVVDAQKR NIPINAIGDL QFHFQDNTKT
     551  SIKVLHTPNI AYDLLSLNEL AAVDITACFT KNVLERSDGT VLAPIVKYGD
     601  FYWVSKKYLL PSNISVPTIN NVHTSESTRK YPYPFIHRML AHANAQTIRY
     651  SLKNNTITYF NESDVDWSSA IDYQCPDCLI GKSTKHRHIK GSRLKYQNSY
     701  EPFQYLHTDI FGPVHNLPKS APSYFISFTD ETTKFRWVYP LHDRREDSIL
     751  DVFTTILAFI KNQFQASVLV IQMDRGSEYT NRTLHKFLEK NGITPCYTTT
     801  ADSRAHGVAE RLNRTLLDDC RTQLQCSGLP NHLWFSAIEF STIVRNSLAS
     851  PKSKKSARQH AGLAGLDIST LLPFGQPVIV NDHNPNSKIH PRGIPGYALH
     901  PSRNSYGYII YLPSLKKTVD TTNYVILQGK ESRLDQFNYD ALTFDEDLNR
     951  LTASYHSFIA SNEIQQSNDL NIESDHDFQS DIELHPEQLR NVLSKAVSPT
    1001  DSTPPSTHTE DSKRVSKTNI RAPREVDPNI SESNILPSKK RSSTPQISDI
    1051  ESTGSGGMHR LDVPLLAPMS QSNTHESSHA SKSKDFRHSD SYSDNETNHT
    1101  NVPISSTGGT NNKTVPQTSE QETEKRIIHR SPSIDTSSSE SNSLHHVVPI
    1151  KTSDTCPKEN TEESIIADLP LPDLPPEPPT ELSDSFKELP PINSHQTNSS
    1201  LGGIGDSNAY TTINSKKRSL EDNETEIKVS RDTWNTKNMR SLEPPRSKKR
    1251  IHLIAAVKAV KSIKPIRTTL RYDEAITYNK DIKEKEKYIQ AYHKEVNQLL
    1301  MMKTWDTDRY YDRKEIDPKR VINSMFIFNR KRDGTHKARF VARGDIQHPD
    1351  TYDPGMQSNT VHHYALMTSL SLALDNNYYI TQLDISSAYL YADIKEELYI
    1401  RPPPHLGMND KLIRLKKSLY GLKQSGANWY ETIKSYLIKQ CGMEEVRGWS
    1451  CVFKNSQVTI CLFVDDMILF SKDLNANKKI ITTLKKQYDT KIINLGESDN
    1501  EIQYDILGLE IKYQRGKYMK LGMENSLTEK IPKLNVPLNP KGRKLSAPGQ
    1551  PGLYIDQDEL EIDEDEYKEK VHEMQKLIGL ASYVGYKFRF DLLYYINTLA
    1601  QHILFPSRQV LDMTYELIQF MWDTRDKQLI WHKNKPTEPD NKLVAISDAS
    1651  YGNQPYYKSQ IGNIYLLNGK VIGGKSTKAS LTCTSTTEAE IHAISESVPL
    1701  LNNLSHLVQE LNKKPITKGL LTDSKSTISI IISNNEEKFR NRFFGTKAMR
    1751  LRDEVSGNHL HVCYIETKKN IADVMTKPLP IKTFKLLTNK WIH*

external links for Yhr214c-bp

Homologs	Interaction Resources	Protein databases/Other	Localization Resources
BLASTP (NCBI)	BioGRID	SCOP Superfamily	YeastGFP
Pfam domains

References cited on this page View Complete Literature Guide for Yhr214c-bp

1)	Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78
2)	Lesage P and Todeschini AL (2005) Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet Genome Res 110(1-4):70-90