UTP5/YDR398W Protein Information

Standard Name	Utp5p 1
Systematic Name	Ydr398wp
ORF Classification	Verified
Description	Subunit of U3-containing Small Subunit (SSU) processome complex involved in production of 18S rRNA and assembly of small ribosomal subunit (1, 2)
Name Description	U Three Protein 1

Experimental Data
Molecules/cell	33100 3

Predicted Sequence	Formatted Sequence or sequence in FASTA format
Length (a.a.)	643
Molecular Weight (Da)	72,001
Isoelectric Point (pI)	4.66

Click on image for expanded interactive view

Post-translational Modifications	PhosphoGRID \| PhosphoPep Database
Domains/motifs	See the graphical view and list of proteins that share domains/motifs in common with Utp5p (InterPro)
Physical Interactions	There are 62 total physical interactions (BioGRID)
Homologs	PDB Homologs \| BLASTP \| BLASTP v. fungi \| Fungal Alignment \| Synteny Viewer
External Sequence Databases	EBI: UPI000006B6E5 \| Q04177 MIPS: YDR398W NCBI: 59800440 \| 6320606 \| 927330 \| NP_010686.1 \| NM_001180706.1 GenBank/EMBL/DDBJ: DAA12241.1 \| U32274

Amino Acid Sequence (or in FASTA format)
1 MDSPVLQSAY DPSGQYLCYV TVALDKQRVG VQPTQRATSS GVDTVWNENF 51 LYLEDSKLKV TCLKWVNLAS SDTVAIILGM NNGEIWLYSV LANEVTYKFT 101 TGNSYEIKDI DLMGNQLWCI DSSDAFYQFD LLQFKLLQHF RINNCVQLNK 151 LTIVPAGDSV AQLLVASHSI SLIDIEEKKV VMTFPGHVSP VSTLQVITNE 201 FFISGAEGDR FLNVYDIHSG MTKCVLVAES DIKELSHSGQ ADSIAVTTED 251 GSLEIFVDPL VSSSTKKRGN KSKKSSKKIQ IVSKDGRKVP IYNAFINKDL 301 LNVSWLQNAT MPYFKNLQWR EIPNEYTVEI SLNWNNKNKS ADRDLHGKDL 351 ASATNYVEGN ARVTSGDNFK HVDDAIKSWE RELTSLEQEQ AKPPQANELL 401 TETFGDKLES STVARISGKK TNLKGSNLKT ATTTGTVTVI LSQALQSNDH 451 SLLETVLNNR DERVIRDTIF RLKPALAVIL LERLAERIAR QTHRQGPLNV 501 WVKWCLIIHG GYLVSIPNLM STLSSLHSTL KRRSDLLPRL LALDARLDCT 551 INKFKTLNYE AGDIHSSEPV VEEDEDDVEY NEELDDAGLI EDGEESYGSE 601 EEEEGDSDNE EEQKHTSSKQ DGRLETEQSD GEEEAGYSDV EME*

Amino Acid Sequence (or in FASTA format)

       1  MDSPVLQSAY DPSGQYLCYV TVALDKQRVG VQPTQRATSS GVDTVWNENF
      51  LYLEDSKLKV TCLKWVNLAS SDTVAIILGM NNGEIWLYSV LANEVTYKFT
     101  TGNSYEIKDI DLMGNQLWCI DSSDAFYQFD LLQFKLLQHF RINNCVQLNK
     151  LTIVPAGDSV AQLLVASHSI SLIDIEEKKV VMTFPGHVSP VSTLQVITNE
     201  FFISGAEGDR FLNVYDIHSG MTKCVLVAES DIKELSHSGQ ADSIAVTTED
     251  GSLEIFVDPL VSSSTKKRGN KSKKSSKKIQ IVSKDGRKVP IYNAFINKDL
     301  LNVSWLQNAT MPYFKNLQWR EIPNEYTVEI SLNWNNKNKS ADRDLHGKDL
     351  ASATNYVEGN ARVTSGDNFK HVDDAIKSWE RELTSLEQEQ AKPPQANELL
     401  TETFGDKLES STVARISGKK TNLKGSNLKT ATTTGTVTVI LSQALQSNDH
     451  SLLETVLNNR DERVIRDTIF RLKPALAVIL LERLAERIAR QTHRQGPLNV
     501  WVKWCLIIHG GYLVSIPNLM STLSSLHSTL KRRSDLLPRL LALDARLDCT
     551  INKFKTLNYE AGDIHSSEPV VEEDEDDVEY NEELDDAGLI EDGEESYGSE
     601  EEEEGDSDNE EEQKHTSSKQ DGRLETEQSD GEEEAGYSDV EME*

external links for Utp5p

Homologs	Interaction Resources	Protein databases/Other	Localization Resources
BLASTP (NCBI)	BioGRID	SCOP Superfamily	Organelle DB
Ashbya (AGD)	BOND	GPMdb (Mass Spec.)	YPL+
Candida (CGD)	BioPIXIE	MIPS	YeastGFP
Candida (CandidaDB)	CYC2008 (complexes)	Pfam domains	YeastRC Public Image Repository
YGOB	Complexome	YeastRC Structure Prediction (Seattle)
YOGY	DIP
	GeneMANIA
	YeastRC Two-Hybrid (Seattle)

References cited on this page View Complete Literature Guide for Utp5p

1)	Dragon F, et al. (2002) A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 417(6892):967-70
2)	Gallagher JE, et al. (2004) RNA polymerase I transcription and pre-rRNA processing are linked by specific SSU processome components. Genes Dev 18(20):2506-17
3)	Ghaemmaghami S, et al. (2003) Global analysis of protein expression in yeast. Nature 425(6959):737-41