YBL005W-B Protein Information

Systematic Name	Ybl005w-bp
Description	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes (1, 2)

Predicted Sequence	Formatted Sequence or sequence in FASTA format
Length (a.a.)	1,755
Molecular Weight (Da)	198,967
Isoelectric Point (pI)	8.27

Click on image for expanded interactive view

Post-translational Modifications	PhosphoGRID
Domains/motifs	See the graphical view and list of proteins that share domains/motifs in common with Ybl005w-bp (InterPro)
Physical Interactions	There are 6 total physical interactions (BioGRID)
Homologs	PDB Homologs \| BLASTP \| BLASTP v. fungi \| Fungal Alignment \| Synteny Viewer
External Sequence Databases	EBI: UPI000006C273 \| Q12490 NCBI: 535981 \| 535986 \| 6319468 \| 74645062 \| NP_009549.1 GenBank/EMBL/DDBJ: DAA07116.1 \| Z35765 \| Z35766
External Classifications	EC: 2.7.7.49 [RNA-directed DNA polymerase] EC: 2.7.7.7 [DNA-directed DNA polymerase] EC: 3.1.26.4 [Ribonuclease H] EC: 3.4.23.- [Aspartic Endopeptidases]

Amino Acid Sequence (or in FASTA format)
1 MESQQLSQHS PIFHGSACAS VTSKEVQTTQ DPLDISASKT EECEKVSTQA 51 NSQQPTTPPS SAVPENHHHA SPQAAQVPLP QNGPYPQQRM MNTQQANISG 101 WPVYGHPSLM PYPPYQMSPM YAPPGAQSQF TQYPQYVGTH LNTPSPESGN 151 SFPDSSSAKS NMTSTNQHVR PPPILTSPND FLNWVKIYIK FLQNSNLGDI 201 IPTATRKAVR QMTDDELTFL CHTFQLFAPS QFLPPWVKDI LSVDYTDIMK 251 ILSKSINKMQ SDTQEVNDIT TLATLHYNGS TPADAFEAEV TNILDRLNNN 301 GIPINNKVAC QFIMRGLSGE YKFLPYARHR CIHMTVADLF SDIHSMYEEQ 351 QESKRNKSTY RRSPSDEKKD SRTYTNTTKP KSITRNSQKP NNSQSRTARA 401 HNVSTFNNSP GPDNDLIRGS TTEPIQLKNT HDLHLGQELT ESTVNHTNHS 451 DDELPGHLLL DSGASRTLIR SAHHIHSASS NPDINVVDAQ KRNIPINAIG 501 DLQFHFQDNT KTSIKVLHTP NIAYDLLSLN ELAAVDITAC FTKNVLERSD 551 GTVLAPIVKY GDFYWVSKKY LLPSNISVPT INNVHTSEST RKYPYPFIHR 601 MLAHANAQTI RYSLKNNTIT YFNESDVDWS SAIDYQCPDC LIGKSTKHRH 651 IKGSRLKYQN SYEPFQYLHT DIFGPVHNLP KSAPSYFISF TDETTKFRWV 701 YPLHDRREDS ILDVFTTILA FIKNQFQASV LVIQMDRGSE YTNRTLHKFL 751 EKNGITPCYT TTADSRAHGV AERLNRTLLD DCRTQLQCSG LPNHLWFSAI 801 EFSTIVRNSL ASPKSKKSAR QHAGLAGLDI STLLPFGQPV IVNDHNPNSK 851 IHPRGIPGYA LHPSRNSYGY IIYLPSLKKT VDTTNYVILQ GKESRLDQFN 901 YDALTFDEDL NRLTASYQSF IASNEIQQSN DLNIESDHDF QSDIELYPEQ 951 PRNVLSKAVS PTDSTPPSTH TEDSKRVSKT NIRAPREVDP NISESNILPS 1001 KKRSSTPQIS DIESTDSGGM HRLDVPLLAP MSQSNTHESS YASKSKDFRH 1051 SDSYSDNETN HTNVPISSTG GTNNKTVPQT SEQETEKRII HRSPSIDTSS 1101 SESNSLHHVV PIKTSDTCPK ENTEESIIAD LPLPDLPPEP PTELSDSFKE 1151 LPPINSRQTN SSLGGIGDSN AYTTINSKKR SLEDNETEIK VSRDTWNTKN 1201 MRSLEPPRSK KRIHLIAAVK AVKSIKPIRT TLRYDEAITY NKDIKEKEKY 1251 IEAYHKEVNQ LLKMKTWDTD KYYDRKEIDP KRVINSMFIF NRKRDGTHKA 1301 RFVARGDIQH PDTYDSGMQS NTVHHYALMT SLSLALDNNY HITQLDISSA 1351 YLYADIKEEL YIRPPPHLGM NDKLIRLKKS LYGLKQSGAN WYETIKSYLI 1401 KQCGMEEVRG WSCVFKNSQV TICLFVDDMV LFSKNLNSNK RIIDKLKMQY 1451 DTKIINLGES DEEIQYDILG LEIKYQRGKY MKLGMENSLT EKIPKLNVPL 1501 NPKGRKLSAP GQPGLYIDQQ ELELEEDDYK MKVHEMQKLI GLASYVGYKF 1551 RFDLLYYINT LAQHILFPSK QVLDMTYELI QFIWNTRDKQ LIWHKSKPVK 1601 PTNKLVVISD ASYGNQPYYK SQIGNIYLLN GKVIGGKSTK ASLTCTSTTE 1651 AEIHAISESV PLLNNLSYLI QELDKKPITK GLLTDSKSTI SIIISNNEEK 1701 FRNRFFGTKA MRLRDEVSGN HLHVCYIETK KNIADVMTKP LPIKTFKLLT 1751 NKWIH*

Amino Acid Sequence (or in FASTA format)

       1  MESQQLSQHS PIFHGSACAS VTSKEVQTTQ DPLDISASKT EECEKVSTQA
      51  NSQQPTTPPS SAVPENHHHA SPQAAQVPLP QNGPYPQQRM MNTQQANISG
     101  WPVYGHPSLM PYPPYQMSPM YAPPGAQSQF TQYPQYVGTH LNTPSPESGN
     151  SFPDSSSAKS NMTSTNQHVR PPPILTSPND FLNWVKIYIK FLQNSNLGDI
     201  IPTATRKAVR QMTDDELTFL CHTFQLFAPS QFLPPWVKDI LSVDYTDIMK
     251  ILSKSINKMQ SDTQEVNDIT TLATLHYNGS TPADAFEAEV TNILDRLNNN
     301  GIPINNKVAC QFIMRGLSGE YKFLPYARHR CIHMTVADLF SDIHSMYEEQ
     351  QESKRNKSTY RRSPSDEKKD SRTYTNTTKP KSITRNSQKP NNSQSRTARA
     401  HNVSTFNNSP GPDNDLIRGS TTEPIQLKNT HDLHLGQELT ESTVNHTNHS
     451  DDELPGHLLL DSGASRTLIR SAHHIHSASS NPDINVVDAQ KRNIPINAIG
     501  DLQFHFQDNT KTSIKVLHTP NIAYDLLSLN ELAAVDITAC FTKNVLERSD
     551  GTVLAPIVKY GDFYWVSKKY LLPSNISVPT INNVHTSEST RKYPYPFIHR
     601  MLAHANAQTI RYSLKNNTIT YFNESDVDWS SAIDYQCPDC LIGKSTKHRH
     651  IKGSRLKYQN SYEPFQYLHT DIFGPVHNLP KSAPSYFISF TDETTKFRWV
     701  YPLHDRREDS ILDVFTTILA FIKNQFQASV LVIQMDRGSE YTNRTLHKFL
     751  EKNGITPCYT TTADSRAHGV AERLNRTLLD DCRTQLQCSG LPNHLWFSAI
     801  EFSTIVRNSL ASPKSKKSAR QHAGLAGLDI STLLPFGQPV IVNDHNPNSK
     851  IHPRGIPGYA LHPSRNSYGY IIYLPSLKKT VDTTNYVILQ GKESRLDQFN
     901  YDALTFDEDL NRLTASYQSF IASNEIQQSN DLNIESDHDF QSDIELYPEQ
     951  PRNVLSKAVS PTDSTPPSTH TEDSKRVSKT NIRAPREVDP NISESNILPS
    1001  KKRSSTPQIS DIESTDSGGM HRLDVPLLAP MSQSNTHESS YASKSKDFRH
    1051  SDSYSDNETN HTNVPISSTG GTNNKTVPQT SEQETEKRII HRSPSIDTSS
    1101  SESNSLHHVV PIKTSDTCPK ENTEESIIAD LPLPDLPPEP PTELSDSFKE
    1151  LPPINSRQTN SSLGGIGDSN AYTTINSKKR SLEDNETEIK VSRDTWNTKN
    1201  MRSLEPPRSK KRIHLIAAVK AVKSIKPIRT TLRYDEAITY NKDIKEKEKY
    1251  IEAYHKEVNQ LLKMKTWDTD KYYDRKEIDP KRVINSMFIF NRKRDGTHKA
    1301  RFVARGDIQH PDTYDSGMQS NTVHHYALMT SLSLALDNNY HITQLDISSA
    1351  YLYADIKEEL YIRPPPHLGM NDKLIRLKKS LYGLKQSGAN WYETIKSYLI
    1401  KQCGMEEVRG WSCVFKNSQV TICLFVDDMV LFSKNLNSNK RIIDKLKMQY
    1451  DTKIINLGES DEEIQYDILG LEIKYQRGKY MKLGMENSLT EKIPKLNVPL
    1501  NPKGRKLSAP GQPGLYIDQQ ELELEEDDYK MKVHEMQKLI GLASYVGYKF
    1551  RFDLLYYINT LAQHILFPSK QVLDMTYELI QFIWNTRDKQ LIWHKSKPVK
    1601  PTNKLVVISD ASYGNQPYYK SQIGNIYLLN GKVIGGKSTK ASLTCTSTTE
    1651  AEIHAISESV PLLNNLSYLI QELDKKPITK GLLTDSKSTI SIIISNNEEK
    1701  FRNRFFGTKA MRLRDEVSGN HLHVCYIETK KNIADVMTKP LPIKTFKLLT
    1751  NKWIH*

external links for Ybl005w-bp

Homologs	Interaction Resources	Protein databases/Other	Localization Resources
BLASTP (NCBI)	BioGRID	SCOP Superfamily	YeastGFP
Pfam domains

References cited on this page View Complete Literature Guide for Ybl005w-bp

1)	Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78
2)	Lesage P and Todeschini AL (2005) Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet Genome Res 110(1-4):70-90