ABF1/YKL112W Protein Information Help

Standard Name Abf1p
Systematic Name Ykl112wp
Alias Baf1p , Obf1p , Reb2p , Sbf1p
ORF Classification Verified
Description DNA binding protein with possible chromatin-reorganizing activity involved in transcriptional activation, gene silencing, and DNA replication and repair (1, 2, 3)
Name Description ARS-Binding Factor 1
Experimental Data
Molecules/cell 4820 4
Predicted Sequence Formatted Sequence or sequence in FASTA format
Length (a.a.) 731
Molecular Weight (Da) 81,752
Isoelectric Point (pI) 4.74

Click on image for expanded interactive view
pbrowse

Post-translational Modifications PhosphoGRID | PhosphoPep Database
Domains/motifs See the graphical view and list of proteins that share domains/motifs in common with Abf1p (InterPro)
Physical Interactions There are 24 total physical interactions (BioGRID)
Homologs PDB Homologs | BLASTP | BLASTP v. fungi | Fungal Alignment | Synteny Viewer
External Sequence Databases EBI: UPI000016837E | P14164
MIPS: YKL112W
NCBI: 114814 | 1680183 | 170968 | 172058 | 308153650 | 3413 | 486187 | 536817 | 58415 | 6322737 | NP_012810.1
GenBank/EMBL/DDBJ: DAA09046.1 | M29067 | M63578 | S93804 | X16385 | X51654 | X77511 | Z28111
Amino Acid Sequence (or in FASTA format)
 
       1  MDKLVVNYYE YKHPIINKDL AIGAHGGKKF PTLGAWYDVI NEYEFQTRCP
      51  IILKNSHRNK HFTFACHLKN CPFKVLLSYA GNAASSETSS PSANNNTNPP
     101  GTPDHIHHHS NNMNNEDNDN NNGSNNKVSN DSKLDFVTDD LEYHLANTHP
     151  DDTNDKVESR SNEVNGNNDD DADANNIFKQ QGVTIKNDTE DDSINKASID
     201  RGLDDESGPT HGNDSGNHRH NEEDDVHTQM TKNYSDVVND EDINVAIANA
     251  VANVDSQSNN KHDGKDDDAT NNNDGQDNNT NNDHNNNSNI NNNNVGSHGI
     301  SSHSPSSIRD TSMNLDVFNS ATDDIPGPFV VTKIEPYHSH PLEDNLSLGK
     351  FILTKIPKIL QNDLKFDQIL ESSYNNSNHT VSKFKVSHYV EESGLLDILM
     401  QRYGLTAEDF EKRLLSQIAR RITTYKARFV LKKKKMGEYN DLQPSSSSNN
     451  NNNNDGELSG TNLRSNSIDY AKHQEISSAG TSSNTTKNVN NNKNDSNDDN
     501  NGNNNNDASN LMESVLDKTS SHRYQPKKMP SVNKWSKPDQ ITHSDVSMVG
     551  LDESNDGGNE NVHPTLAEVD AQEARETAQL AIDKINSYKR SIDDKNGDGH
     601  NNSSRNVVDE NLINDMDSED AHKSKRQHLS DITLEERNED DKLPHEVAEQ
     651  LRLLSSHLKE VENLHQNNDD DVDDVMVDVD VESQYNKNTT HHNNHHSQPH
     701  HDEEDVAGLI GKADDEEDLS DENIQPELRG Q*

external links for Abf1p
Homologs Interaction Resources Protein databases/Other Localization Resources
BLASTP (NCBI) BioGRID SCOP Superfamily YPL+
Ashbya (AGD) BOND GPMdb (Mass Spec.) YeastGFP
YGOB BioPIXIE MIPS YeastRC Public Image Repository
YOGY CYC2008 (complexes) Pfam domains

Complexome YeastRC Structure Prediction (Seattle)

DIP


GeneMANIA

References cited on this page View Complete Literature Guide for Abf1p
1) de Boer M, et al.  (2000) Stp1p, Stp2p and Abf1p are involved in regulation of expression of the amino acid transporter gene BAP3 of Saccharomyces cerevisiae. Nucleic Acids Res 28(4):974-81
2) Reed SH, et al.  (1999) Yeast autonomously replicating sequence binding factor is involved in nucleotide excision repair. Genes Dev 13(23):3052-8
3) Schroeder SC and Weil PA  (1998) Genetic tests of the role of Abf1p in driving transcription of the yeast TATA box bindng protein-encoding gene, SPT15. J Biol Chem 273(31):19884-91
4) Ghaemmaghami S, et al.  (2003) Global analysis of protein expression in yeast. Nature 425(6959):737-41