RPS6B/YBR181C Protein Information Help

Standard Name Rps6bp
Systematic Name Ybr181cp
Alias Lpg18p , Rps101p , Rps102p
ORF Classification Verified
Description Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S6, no bacterial homolog; RPS6B has a paralog, RPS6A, that arose from the whole genome duplication (1, 2, 3, 4)
Name Description Ribosomal Protein of the Small subunit
Gene Product S6e 4
Experimental Data
Molecules/cell 38800 5
Predicted Sequence Formatted Sequence or sequence in FASTA format
Length (a.a.) 236
Molecular Weight (Da) 26,996
Isoelectric Point (pI) 11.22

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Post-translational Modifications PhosphoGRID | PhosphoPep Database
Domains/motifs See the graphical view and list of proteins that share domains/motifs in common with Rps6bp (InterPro)
Physical Interactions There are 94 total physical interactions (BioGRID)
Homologs PDB Homologs | BLASTP | BLASTP v. fungi | Fungal Alignment | Synteny Viewer
External Sequence Databases EBI: UPI0000036C27 | P0CX38
MIPS: YBR181C
NCBI: 338819356 | 398365321 | 536534 | 6325167 | NP_009740.3 | NP_015235.1
GenBank/EMBL/DDBJ: DAA07295.1 | J01350 | Z36050
Amino Acid Sequence (or in FASTA format)
 
       1  MKLNISYPVN GSQKTFEIDD EHRIRVFFDK RIGQEVDGEA VGDEFKGYVF
      51  KISGGNDKQG FPMKQGVLLP TRIKLLLTKN VSCYRPRRDG ERKRKSVRGA
     101  IVGPDLAVLA LVIVKKGEQE LEGLTDTTVP KRLGPKRANN IRKFFGLSKE
     151  DDVRDFVIRR EVTKGEKTYT KAPKIQRLVT PQRLQRKRHQ RALKVRNAQA
     201  QREAAAEYAQ LLAKRLSERK AEKAEIRKRR ASSLKA*

external links for Rps6bp
Homologs Interaction Resources Protein databases/Other Localization Resources
BLASTP (NCBI) BioGRID SCOP Superfamily Organelle DB
Ashbya (AGD) BOND GPMdb (Mass Spec.) YPL+
Aspergillus (AspGD) BioPIXIE MIPS YeastGFP
Candida (CGD) CYC2008 (complexes) Pfam domains YeastRC Public Image Repository
Candida (CandidaDB) Complexome YeastRC Structure Prediction (Seattle)
YGOB GeneMANIA

YOGY YeastRC Two-Hybrid (Seattle)

References cited on this page View Complete Literature Guide for Rps6bp
1) Planta RJ and Mager WH  (1998) The list of cytoplasmic ribosomal proteins of Saccharomyces cerevisiae. Yeast 14(5):471-7
2) Lecompte O, et al.  (2002) Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale. Nucleic Acids Res 30(24):5382-90
3) Byrne KP and Wolfe KH  (2005) The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res 15(10):1456-61
4) Jenner L, et al.  (2012) Crystal structure of the 80S yeast ribosome. Curr Opin Struct Biol 22(6):759-67
5) Ghaemmaghami S, et al.  (2003) Global analysis of protein expression in yeast. Nature 425(6959):737-41