RRT1/YBL048W Protein Information Help

Standard Name Rrt1p 1
Systematic Name Ybl048wp
ORF Classification Dubious
Description Identified in a screen for mutants with increased levels of rDNA transcription; dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data (1, 2)
Name Description Regulator of rDNA Transcription 1
Predicted Sequence Formatted Sequence or sequence in FASTA format
Length (a.a.) 103
Molecular Weight (Da) 12,447
Isoelectric Point (pI) 9.38

Click on image for expanded interactive view
pbrowse

Post-translational Modifications PhosphoPep Database
Domains/motifs See the graphical view and list of proteins that share domains/motifs in common with Rrt1p (InterPro)
Transmembrane Domains There are 2 total predicted transmembrane domains (TMHMM)
Signal Peptide(s) There are 1 total predicted predicted signal peptide(s) (SignalP)
Homologs PDB Homologs | BLASTP | BLASTP v. fungi | Fungal Alignment | Synteny Viewer
External Sequence Databases EBI: UPI0000036C1F | P38192
MIPS: YBL048W
NCBI: 51014075 | 536071 | 586427
GenBank/EMBL/DDBJ: AY693312 | Z23261 | Z35809
Amino Acid Sequence (or in FASTA format)
 
       1  MILFKNLVFL PSILIGYISI RVSLLVWVNW VLVWSSCFQV AFIFSLWYFI
      51  LSIYTFFYSK KIKQIISYEP SYFVFSYRAI DLCPERVLLY FFCIFNNVVF
     101  PML*

external links for Rrt1p
Homologs Interaction Resources Protein databases/Other Localization Resources
Ashbya (AGD) BOND SCOP Superfamily YPL+
YGOB BioPIXIE GPMdb (Mass Spec.) YeastGFP
YOGY CYC2008 (complexes) MIPS

Complexome Pfam domains

GeneMANIA

References cited on this page View Complete Literature Guide for Rrt1p
1) Hontz RD, et al.  (2009) Genetic Identification of Factors That Modulate Ribosomal DNA Transcription in Saccharomyces cerevisiae. Genetics 182(1):105-19
2) Fisk DG, et al.  (2006) Saccharomyces cerevisiae S288C genome annotation: a working hypothesis. Yeast 23(12):857-65