SNC1/YAL030W Protein Information Help

Standard Name Snc1p 1
Systematic Name Yal030wp
ORF Classification Verified
Description Vesicle membrane receptor protein (v-SNARE); involved in the fusion between Golgi-derived secretory vesicles with the plasma membrane; proposed to be involved in endocytosis; member of the synaptobrevin/VAMP family of R-type v-SNARE proteins; SNC1 has a paralog, SNC2, that arose from the whole genome duplication (2, 3, 4, 5)
Name Description Suppressor of the Null allele of CAP 1
Predicted Sequence Formatted Sequence or sequence in FASTA format
Length (a.a.) 117
Molecular Weight (Da) 13,201
Isoelectric Point (pI) 8.42

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Post-translational Modifications PhosphoGRID | PhosphoPep Database
Domains/motifs See the graphical view and list of proteins that share domains/motifs in common with Snc1p (InterPro)
Transmembrane Domains There are 1 total predicted transmembrane domains (TMHMM)
Physical Interactions There are 51 total physical interactions (BioGRID)
Homologs PDB Homologs | BLASTP | BLASTP v. fungi | Fungal Alignment | Synteny Viewer
External Sequence Databases EBI: UPI0000135B22 | P31109
MIPS: YAL030W
NCBI: 160877898 | 160877902 | 160877906 | 172655 | 401107 | 595555 | 6319289 | NP_009372.1
GenBank/EMBL/DDBJ: DAA06958.1 | M91157 | U12980
Amino Acid Sequence (or in FASTA format)
 
       1  MSSSTPFDPY ALSEHDEERP QNVQSKSRTA ELQAEIDDTV GIMRDNINKV
      51  AERGERLTSI EDKADNLAVS AQGFKRGANR VRKAMWYKDL KMKMCLALVI
     101  IILLVVIIVP IAVHFSR*

external links for Snc1p
Homologs Interaction Resources Protein databases/Other Localization Resources
BLASTP (NCBI) BioGRID SCOP Superfamily Organelle DB
Ashbya (AGD) BOND GPMdb (Mass Spec.) YPL+
YGOB BioPIXIE MIPS YeastGFP
YOGY CYC2008 (complexes) Pfam domains

Complexome YeastRC Structure Prediction (Seattle)

DIP


GeneMANIA

References cited on this page View Complete Literature Guide for Snc1p
1) Gerst JE, et al.  (1992) SNC1, a yeast homolog of the synaptic vesicle-associated membrane protein/synaptobrevin gene family: genetic interactions with the RAS and CAP genes. Proc Natl Acad Sci U S A 89(10):4338-42
2) David D, et al.  (1998) Involvement of long chain fatty acid elongation in the trafficking of secretory vesicles in yeast. J Cell Biol 143(5):1167-82
3) Protopopov V, et al.  (1993) Homologs of the synaptobrevin/VAMP family of synaptic vesicle proteins function on the late secretory pathway in S. cerevisiae. Cell 74(5):855-61
4) Gurunathan S, et al.  (2000) Yeast exocytic v-SNAREs confer endocytosis. Mol Biol Cell 11(10):3629-43
5) Byrne KP and Wolfe KH  (2005) The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res 15(10):1456-61