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PDB Homolog: RPT5/YOR117W Help



This page presents information for the proteins of known structure with sequence similarity to the Saccharomyces cerevisiae protein RPT5/YOR117W. The analysis was performed by comparing yeast protein sequences against protein sequences in The RCSB Protein Databank (PDB) using WU-BLAST.
 
Last updated on 2014-06-05

57 PDB homolog(s) found for yeast gene RPT5/YOR117W

RPT5/YOR117W links
  • Locus Info
  • PDB protein structure(s) homologous to RPT5Homolog Source (per PDB)Protein Alignment: RPT5 vs. HomologExternal Links
    P-Value%Identical%SimilarAlignment
    4CR2 ( Chain: M, I, J, H, K, L)
    Deep Classification Of A Large Cryo-em Dataset Defines The Conformational Landscape Of The 26s Proteasome
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiaeChain M = 2.4e-2241000View alignmentSCOP
    MMDB
    CATH
    Chain I = 3.1e-754223View alignment
    Chain J = 1.2e-734719View alignment
    Chain H = 4.7e-724317View alignment
    Chain K = 1.2e-663720View alignment
    Chain L = 2.5e-663819View alignment
    4CR4 ( Chain: M, I, J, H, K, L)
    Deep Classification Of A Large Cryo-em Dataset Defines The Conformational Landscape Of The 26s Proteasome
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiaeChain M = 2.4e-2241000View alignmentSCOP
    MMDB
    CATH
    Chain I = 3.1e-754223View alignment
    Chain J = 1.2e-734719View alignment
    Chain H = 4.7e-724317View alignment
    Chain K = 1.2e-663720View alignment
    Chain L = 2.5e-663819View alignment
    4CR3 ( Chain: M, I, J, H, K, L)
    Deep Classification Of A Large Cryo-em Dataset Defines The Conformational Landscape Of The 26s Proteasome
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiaeChain M = 2.4e-2241000View alignmentSCOP
    MMDB
    CATH
    Chain I = 3.1e-754223View alignment
    Chain J = 1.2e-734719View alignment
    Chain H = 4.7e-724317View alignment
    Chain K = 1.2e-663720View alignment
    Chain L = 2.5e-663819View alignment
    3H4M ( Chain: C, B, A)
    Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase
  • PDB_Info
  • PDB_Structure
  • Methanocaldococcus jannaschiiChain C = 2.7e-745320View alignmentSCOP
    MMDB
    CATH
    Chain B = 2.7e-745320View alignment
    Chain A = 2.7e-745320View alignment
    2CE7 ( Chain: D, E, F, A, C, B)
    Edta Treated
  • PDB_Info
  • PDB_Structure
  • Thermotoga maritimaChain D = 3.1e-524517View alignmentSCOP
    MMDB
    CATH
    Chain E = 3.1e-524517View alignment
    Chain F = 3.1e-524517View alignment
    Chain A = 3.1e-524517View alignment
    Chain C = 3.1e-524517View alignment
    Chain B = 3.1e-524517View alignment
    2CEA ( Chain: F, E, A, B, C, D)
    Cell Division Protein Ftsh
  • PDB_Info
  • PDB_Structure
  • Thermotoga maritimaChain F = 3.1e-524517View alignmentSCOP
    MMDB
    CATH
    Chain E = 3.1e-524517View alignment
    Chain A = 3.1e-524517View alignment
    Chain B = 3.1e-524517View alignment
    Chain C = 3.1e-524517View alignment
    Chain D = 3.1e-524517View alignment
    3KDS ( Chain: E, F, G)
    Apo-ftsh Crystal Structure
  • PDB_Info
  • PDB_Structure
  • Thermotoga maritimaChain E = 1.4e-514517View alignmentSCOP
    MMDB
    CATH
    Chain F = 1.4e-514517View alignment
    Chain G = 1.4e-514517View alignment
    4EIW ( Chain: B, C, A, D, E, F)
    Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l)
  • PDB_Info
  • PDB_Structure
  • Thermus thermophilus HB8Chain B = 1.6e-504217View alignmentSCOP
    MMDB
    CATH
    Chain C = 1.6e-504217View alignment
    Chain A = 1.6e-504217View alignment
    Chain D = 1.6e-504217View alignment
    Chain E = 1.6e-504217View alignment
    Chain F = 1.6e-504217View alignment
    2DHR ( Chain: B, C, D, A, F, E)
    Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l)
  • PDB_Info
  • PDB_Structure
  • Thermus thermophilusChain B = 1.6e-504217View alignmentSCOP
    MMDB
    CATH
    Chain C = 1.6e-504217View alignment
    Chain D = 1.6e-504217View alignment
    Chain A = 1.6e-504217View alignment
    Chain F = 1.6e-504217View alignment
    Chain E = 1.6e-504217View alignment
    1IY2 ( Chain: A)
    Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus
  • PDB_Info
  • PDB_Structure
  • Thermus thermophilus3.2e-504317View alignmentSCOP
    MMDB
    CATH
    1IXZ ( Chain: A)
    Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus
  • PDB_Info
  • PDB_Structure
  • Thermus thermophilus8.6e-504416View alignmentSCOP
    MMDB
    CATH
    1IY0 ( Chain: A)
    Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp From Thermus Thermophilus
  • PDB_Info
  • PDB_Structure
  • Thermus thermophilus8.6e-504416View alignmentSCOP
    MMDB
    CATH
    1IY1 ( Chain: A)
    Crystal Structure Of The Ftsh Atpase Domain With Adp From Thermus Thermophilus
  • PDB_Info
  • PDB_Structure
  • Thermus thermophilus8.6e-504416View alignmentSCOP
    MMDB
    CATH
    2R62 ( Chain: A, B)
    Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh
  • PDB_Info
  • PDB_Structure
  • Helicobacter pyloriChain A = 3.3e-484022View alignmentSCOP
    MMDB
    CATH
    Chain B = 3.3e-484022View alignment
    2R65 ( Chain: B, C, D, A, E)
    Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Adp Complex
  • PDB_Info
  • PDB_Structure
  • Helicobacter pyloriChain B = 3.3e-484022View alignmentSCOP
    MMDB
    CATH
    Chain C = 3.3e-484022View alignment
    Chain D = 3.3e-484022View alignment
    Chain A = 3.3e-484022View alignment
    Chain E = 3.3e-484022View alignment
    1LV7 ( Chain: A)
    Crystal Structure Of The Aaa Domain Of Ftsh
  • PDB_Info
  • PDB_Structure
  • Escherichia coli3.8e-474220View alignmentSCOP
    MMDB
    CATH
    4KLN ( Chain: E, D, C, B, A, F)
    Structure Of P97 N-d1 A232e Mutant In Complex With Atpgs
  • PDB_Info
  • PDB_Structure
  • Homo sapiensChain E = 3.4e-464119View alignmentSCOP
    MMDB
    CATH
    Chain D = 3.4e-464119View alignment
    Chain C = 3.4e-464119View alignment
    Chain B = 3.4e-464119View alignment
    Chain A = 3.4e-464119View alignment
    Chain F = 3.4e-464119View alignment
    1E32 ( Chain: A)
    Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97
  • PDB_Info
  • PDB_Structure
  • Mus musculus7.0e-464119View alignmentSCOP
    MMDB
    CATH
    1S3S ( Chain: A, B, C, D, E, F)
    Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH P47 C
  • PDB_Info
  • PDB_Structure
  • Mus musculusChain A = 7.0e-464119View alignmentSCOP
    MMDB
    CATH
    Chain B = 7.0e-464119View alignment
    Chain C = 7.0e-464119View alignment
    Chain D = 7.0e-464119View alignment
    Chain E = 7.0e-464119View alignment
    Chain F = 7.0e-464119View alignment
    3HU1 ( Chain: B, F, E, D, A, C)
    Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
  • PDB_Info
  • PDB_Structure
  • Homo sapiensChain B = 9.0e-464119View alignmentSCOP
    MMDB
    CATH
    Chain F = 9.0e-464119View alignment
    Chain E = 9.0e-464119View alignment
    Chain D = 9.0e-464119View alignment
    Chain A = 9.0e-464119View alignment
    Chain C = 9.0e-464119View alignment
    4KOD ( Chain: K, J, I, H, G, F, E, D, C, B, A, L)
    Structure Of P97 N-d1 R155h Mutant In Complex With Adp
  • PDB_Info
  • PDB_Structure
  • Homo sapiensChain K = 9.0e-464119View alignmentSCOP
    MMDB
    CATH
    Chain J = 9.0e-464119View alignment
    Chain I = 9.0e-464119View alignment
    Chain H = 9.0e-464119View alignment
    Chain G = 9.0e-464119View alignment
    Chain F = 9.0e-464119View alignment
    Chain E = 9.0e-464119View alignment
    Chain D = 9.0e-464119View alignment
    Chain C = 9.0e-464119View alignment
    Chain B = 9.0e-464119View alignment
    Chain A = 9.0e-464119View alignment
    Chain L = 9.0e-464119View alignment
    4KO8 ( Chain: B, A)
    Structure Of P97 N-d1 R155h Mutant In Complex With Atpgs
  • PDB_Info
  • PDB_Structure
  • Homo sapiensChain B = 9.0e-464119View alignmentSCOP
    MMDB
    CATH
    Chain A = 9.0e-464119View alignment
    3HU3 ( Chain: B, A)
    Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
  • PDB_Info
  • PDB_Structure
  • Homo sapiensChain B = 9.0e-464119View alignmentSCOP
    MMDB
    CATH
    Chain A = 9.0e-464119View alignment
    3HU2 ( Chain: F, E, D, C, B, A)
    Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
  • PDB_Info
  • PDB_Structure
  • Homo sapiensChain F = 9.0e-464119View alignmentSCOP
    MMDB
    CATH
    Chain E = 9.0e-464119View alignment
    Chain D = 9.0e-464119View alignment
    Chain C = 9.0e-464119View alignment
    Chain B = 9.0e-464119View alignment
    Chain A = 9.0e-464119View alignment
    1R7R ( Chain: A)
    The Crystal Structure Of Murine P97VCP AT 3.6A
  • PDB_Info
  • PDB_Structure
  • Mus musculus3.4e-454119View alignmentSCOP
    MMDB
    CATH
    3CF0 ( Chain: L, K, J, I, H, G, F, E, D, C, B, A, N, M)
    Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
  • PDB_Info
  • PDB_Structure
  • Mus musculusChain L = 3.9e-454019View alignmentSCOP
    MMDB
    CATH
    Chain K = 3.9e-454019View alignment
    Chain J = 3.9e-454019View alignment
    Chain I = 3.9e-454019View alignment
    Chain H = 3.9e-454019View alignment
    Chain G = 3.9e-454019View alignment
    Chain F = 3.9e-454019View alignment
    Chain E = 3.9e-454019View alignment
    Chain D = 3.9e-454019View alignment
    Chain C = 3.9e-454019View alignment
    Chain B = 3.9e-454019View alignment
    Chain A = 3.9e-454019View alignment
    Chain N = 3.9e-454019View alignment
    Chain M = 3.9e-454019View alignment
    3CF3 ( Chain: B, A, C)
    Structure Of P97VCP IN COMPLEX WITH ADP
  • PDB_Info
  • PDB_Structure
  • Mus musculusChain B = 4.2e-454119View alignmentSCOP
    MMDB
    CATH
    Chain A = 4.2e-454119View alignment
    Chain C = 4.2e-454119View alignment
    3CF2 ( Chain: D, C, A, B)
    Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
  • PDB_Info
  • PDB_Structure
  • Mus musculusChain D = 4.2e-454119View alignmentSCOP
    MMDB
    CATH
    Chain C = 4.2e-454119View alignment
    Chain A = 4.2e-454119View alignment
    Chain B = 4.2e-454119View alignment
    3CF1 ( Chain: C, B, A)
    Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
  • PDB_Info
  • PDB_Structure
  • Mus musculusChain C = 4.2e-454119View alignmentSCOP
    MMDB
    CATH
    Chain B = 4.2e-454119View alignment
    Chain A = 4.2e-454119View alignment
    2X8A ( Chain: A)
    Human Nuclear Valosin Containing Protein Like (Nvl), C- Terminal Aaa-Atpase Domain
  • PDB_Info
  • PDB_Structure
  • Homo sapiens1.1e-423819View alignmentSCOP
    MMDB
    CATH
    2QZ4 ( Chain: A)
    Human Paraplegin, Aaa Domain In Complex With Adp
  • PDB_Info
  • PDB_Structure
  • Homo sapiens9.7e-424019View alignmentSCOP
    MMDB
    CATH
    4L15 ( Chain: A)
    Crystal Structure Of Figl-1 Aaa Domain
  • PDB_Info
  • PDB_Structure
  • Caenorhabditis elegans1.9e-384120View alignmentSCOP
    MMDB
    CATH
    4L16 ( Chain: A)
    Crystal Structure Of Figl-1 Aaa Domain In Complex With Adp
  • PDB_Info
  • PDB_Structure
  • Caenorhabditis elegans1.9e-384120View alignmentSCOP
    MMDB
    CATH
    2ZAM ( Chain: A)
    Crystal Structure Of Mouse Skd1/vps4b Apo-form
  • PDB_Info
  • PDB_Structure
  • Mus musculus1.7e-373721View alignmentSCOP
    MMDB
    CATH
    2ZAO ( Chain: A)
    Crystal Structure Of Mouse Skd1/vps4b Adp-form
  • PDB_Info
  • PDB_Structure
  • Mus musculus1.7e-373721View alignmentSCOP
    MMDB
    CATH
    2ZAN ( Chain: A)
    Crystal Structure Of Mouse Skd1/vps4b Atp-form
  • PDB_Info
  • PDB_Structure
  • Mus musculus1.7e-373721View alignmentSCOP
    MMDB
    CATH
    3VFD ( Chain: A)
    Human Spastin Aaa Domain
  • PDB_Info
  • PDB_Structure
  • Homo sapiens4.4e-373921View alignmentSCOP
    MMDB
    CATH
    1XWI ( Chain: A)
    Crystal Structure Of Vps4b
  • PDB_Info
  • PDB_Structure
  • Homo sapiens7.2e-373920View alignmentSCOP
    MMDB
    CATH
    3B9P ( Chain: A)
    Spastin
  • PDB_Info
  • PDB_Structure
  • Drosophila melanogaster7.2e-374019View alignmentSCOP
    MMDB
    CATH
    3D8B ( Chain: A, B)
    Crystal Structure Of Human Fidgetin-Like Protein 1 In Complex With Adp
  • PDB_Info
  • PDB_Structure
  • Homo sapiensChain A = 1.9e-363624View alignmentSCOP
    MMDB
    CATH
    Chain B = 1.9e-363624View alignment
    2QPA ( Chain: B, A, C)
    Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Adp
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiaeChain B = 6.5e-363820View alignmentSCOP
    MMDB
    CATH
    Chain A = 6.5e-363820View alignment
    Chain C = 6.5e-363820View alignment
    2RKO ( Chain: A)
    Crystal Structure Of The Vps4p-Dimer
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae6.5e-363820View alignmentSCOP
    MMDB
    CATH
    2QP9 ( Chain: X)
    Crystal Structure Of S.Cerevisiae Vps4
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae6.5e-363820View alignmentSCOP
    MMDB
    CATH
    3EIE ( Chain: A)
    Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound State
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.4e-353820View alignmentSCOP
    MMDB
    CATH
    3EIH ( Chain: B, C, A)
    Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Atpgammas
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiaeChain B = 1.4e-353820View alignmentSCOP
    MMDB
    CATH
    Chain C = 1.4e-353820View alignment
    Chain A = 1.4e-353820View alignment
    4LGM ( Chain: A)
    Crystal Structure Of Sulfolobus Solfataricus Vps4
  • PDB_Info
  • PDB_Structure
  • Sulfolobus solfataricus P25.4e-323524View alignmentSCOP
    MMDB
    CATH
    4LCB ( Chain: A)
    Structure Of Vps4 Homolog From Acidianus Hospitalis
  • PDB_Info
  • PDB_Structure
  • Acidianus hospitalis W12.4e-293422View alignmentSCOP
    MMDB
    CATH
    2KRK ( Chain: A)
    Solution Nmr Structure Of 26s Protease Regulatory Subunit 8 From H.Sapiens, Northeast Structural Genomics Consortium Target Target Hr3102a
  • PDB_Info
  • PDB_Structure
  • Homo sapiens3.4e-094120View alignmentSCOP
    MMDB
    CATH
    4JPO ( Chain: D, C)
    5a Resolution Structure Of Proteasome Assembly Chaperone Hsm3 In Complex With A C-terminal Fragment Of Rpt1
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae S288cChain D = 1.2e-083424View alignmentSCOP
    MMDB
    CATH
    Chain C = 1.2e-083424View alignment
    4A3V ( Chain: D, B)
    Yeast Regulatory Particle Proteasome Assembly Chaperone Hsm3 In Complex With Rpt1 C-Terminal Fragment
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae W303Chain D = 1.2e-083424View alignmentSCOP
    MMDB
    CATH
    Chain B = 1.2e-083424View alignment
    3KW6 ( Chain: A)
    Crystal Structure Of A Domain Of 26s Proteasome Regulatory Subunit 8 From Homo Sapiens. Northeast Structural Genomics Consortium Target Id Hr3102a
  • PDB_Info
  • PDB_Structure
  • Homo sapiens1.9e-083820View alignmentSCOP
    MMDB
    CATH
    1OFI ( Chain: C, B, A)
    Asymmetric Complex Between Hslv And I-Domain Deleted Hslu (H. Influenzae)
  • PDB_Info
  • PDB_Structure
  • Haemophilus influenzae Rd KW20Chain C = 1.5e-063215View alignmentSCOP
    MMDB
    CATH
    Chain B = 1.5e-063215View alignment
    Chain A = 1.5e-063215View alignment
    1OFH ( Chain: C, A, B)
    Asymmetric Complex Between Hslv And I-domain Deleted Hslu (h. Influenzae)
  • PDB_Info
  • PDB_Structure
  • Haemophilus influenzae Rd KW20Chain C = 1.5e-063215View alignmentSCOP
    MMDB
    CATH
    Chain A = 1.5e-063215View alignment
    Chain B = 1.5e-063215View alignment
    3VLF ( Chain: D, B)
    Crystal Structure Of Yeast Proteasome Interacting Protein
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae S288cChain D = 1.6e-063125View alignmentSCOP
    MMDB
    CATH
    Chain B = 1.6e-063125View alignment
    3AJI ( Chain: B, D)
    Structure Of Gankyrin-s6atpase Photo-cross-linked Site-specifically, And Incoporated By Genetic Code Expansion
  • PDB_Info
  • PDB_Structure
  • Mus musculusChain B = 0.0063012428View alignmentSCOP
    MMDB
    CATH
    Chain D = 0.0063012428View alignment
    2DWZ ( Chain: D, B)
    Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome
  • PDB_Info
  • PDB_Structure
  • Rattus norvegicusChain D = 0.0063012428View alignmentSCOP
    MMDB
    CATH
    Chain B = 0.0063012428View alignment
    2DVW ( Chain: B)
    Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome
  • PDB_Info
  • PDB_Structure
  • Homo sapiens0.0063012428View alignmentSCOP
    MMDB
    CATH

    Last updated on 2014-06-05